View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_high_5 (Length: 391)
Name: NF17858_high_5
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 25963560 - 25963428
Alignment:
| Q |
59 |
aattcgaggtggccgccgggaagagcgaaggttgcgtctccgacggaagcgcaacggcggccgagaagaaacgatctgcctttcaagagaaatacgacta |
158 |
Q |
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| T |
25963560 |
aattcaaggtggccgccgggaagagcgaaggttgcgtctccgacggaagcacgacggcggccgagaaggaacgatctacctttcaagagaaatacgacaa |
25963461 |
T |
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| Q |
159 |
cagcaactctaggttctggtggcggcgacacca |
191 |
Q |
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| T |
25963460 |
cagcaactctaggttccggtggcggcgacacca |
25963428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25963701 - 25963645
Alignment:
| Q |
1 |
atctaaccctgtttcttctttcacttctctcgctgcacattcctcaaaactttcacc |
57 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25963701 |
atctaaccctgtttcttctttcacttctctcgctgcacattcctcaaaactttcacc |
25963645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 250 - 374
Target Start/End: Complemental strand, 27205310 - 27205189
Alignment:
| Q |
250 |
ctattaagatttgttaattaccttataccaaacaaaaagttcttttaattaattagcttcaccctttcattcaccttatttaattaaccatagtaaattt |
349 |
Q |
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||||||| |||||||||||| ||||||||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27205310 |
ctattaaaatttgttaattaacttataccaaa-aaaaatttcttt-aattaattggcttcaccctttcattcaccttatttaatcaaccatagtaaattt |
27205213 |
T |
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| Q |
350 |
atactataataccctttgaagaaca |
374 |
Q |
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| T |
27205212 |
acactataata-actttgaagaaca |
27205189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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