View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_high_6 (Length: 388)
Name: NF17858_high_6
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 377
Target Start/End: Original strand, 22363491 - 22363847
Alignment:
| Q |
21 |
aatacctctacggacaaatatgatcaaattggagtcgagatactgaggaatgaacaaggatcttggttccatattaagcaaaccaatgtgcatgtgccta |
120 |
Q |
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| T |
22363491 |
aatacctctacggacaaatatgatcaaattggagtcaagatactgaggaatggaacaggatcttggttccatattaagcaaaccaatgtgcatgtgccta |
22363590 |
T |
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| Q |
121 |
tccaaaaacctatcatcattgtttttaaacaacctcaattctcctgcatgagttttgacaacactctttgagttttgcatcaagaataagtttgatgatg |
220 |
Q |
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| T |
22363591 |
tccaaaaacctatcatcattgtttttaaacaacctcaattctcctgcatgagttttgacaacactctttgagttttgcatcaagaataagtttgatgatg |
22363690 |
T |
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| Q |
221 |
acccttcttctctttcttcatcttcacacattgttatggtcactcctccaagaaggaggaagaacaaaagggtggttatggtttttgccatggtgtttga |
320 |
Q |
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| T |
22363691 |
acccttcttctctttcttcatcttcacacattgttatggtcactcctccaagaaggaggaagaacaaaagggtggttatggtttttgccatggtgtttga |
22363790 |
T |
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| Q |
321 |
tgatttgagcggtgtgatgatgaaggtggtttatgaagggaatgtgaagagagtata |
377 |
Q |
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| T |
22363791 |
tgatttgagcggtgtgatgatgaaggtggtttatgaagggaatgtgaagagagtata |
22363847 |
T |
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