View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17858_high_7 (Length: 384)
Name: NF17858_high_7
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 137 - 358
Target Start/End: Original strand, 32741148 - 32741370
Alignment:
| Q |
137 |
ttatcaaacccatcatcaaccgcagccatcctctcttcttcactatcataaaagcgtgtgcctataattgaatcaccatcatcactactaacatctccat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32741148 |
ttatcaaacccatcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccac |
32741247 |
T |
|
| Q |
237 |
catcgatatctgcttcaccaacattgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcaacaacatttatagcatttcc |
336 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32741248 |
catcgatgtctacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcc |
32741347 |
T |
|
| Q |
337 |
t-aattcaccttaggttcaacat |
358 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
32741348 |
taaattcaccttaggttcaacat |
32741370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 32733861 - 32733922
Alignment:
| Q |
78 |
agtaaagttactccgctttttacccggcccatttctaccgttgcgtttgtgtgaaatttttat |
140 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32733861 |
agtaaagttactgagctttttacccg-cccatttctaccgttgcgtttgtgtgaaatttttat |
32733922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 139 - 358
Target Start/End: Original strand, 11119446 - 11119666
Alignment:
| Q |
139 |
atcaaacccatcatcaaccgcagccatcctctcttcttcactatcataaaagcgtgtgcctataattgaatcaccatcatcactactaacatctccatca |
238 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| |||| |||| |||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119446 |
atcaaacctatcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatca |
11119545 |
T |
|
| Q |
239 |
tcgatatctgcttcaccaacattgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcaacaacatttatagcatttcct- |
337 |
Q |
| |
|
||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||| |||||||| |
|
|
| T |
11119546 |
tcgttgtctgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttccta |
11119645 |
T |
|
| Q |
338 |
aattcaccttaggttcaacat |
358 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
11119646 |
aattcaccttaggttcaacat |
11119666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 154 - 359
Target Start/End: Original strand, 12205970 - 12206176
Alignment:
| Q |
154 |
aaccgcagccatcctctcttcttcactatcataaaagcgtgtgcctataattgaatcaccatcatcactactaacatctccatcatcgatatctgcttca |
253 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
254 |
ccaacattgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcaacaacatttatagcatttcct-aattcaccttaggtt |
352 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
|
| Q |
353 |
caacatc |
359 |
Q |
| |
|
||||||| |
|
|
| T |
12206170 |
caacatc |
12206176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University