View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_low_12 (Length: 325)
Name: NF17858_low_12
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 26035169 - 26034869
Alignment:
| Q |
18 |
caatcaataagcaccatggtacnnnnnnntaaggtatatattagttcttcagtcatgttccataattccatctagaaattgnnnnnnnn--tctatgaac |
115 |
Q |
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| T |
26035169 |
caatcaataagcaccatggtacaaaaaaataaggtatatattagttcttcagtcatgttccataattccatctaggaattgaaaaaaaaaatctatgaac |
26035070 |
T |
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| Q |
116 |
accgacatcagatatgacaccggcgacactgacacatataataatttgaaaaatgaaagtaattgaatgtaatctgtttgccggtgtccgaacaaactta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26035069 |
accgacatcagatatgacaccggcgacactgacacatgtaataatttaaaaaatgaaagtaattgaatgtaatctgtttgccggtgtccgaacaaactta |
26034970 |
T |
|
| Q |
216 |
acatcagtgttgcatagaaaaaacaatcaatgcatgtaccttaatttccttggaggcagcaacttcagaagatataggatcaacttgaacctcagtatta |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26034969 |
acgtcagtgttgcatagaaaaaacaatcaatgcatgtaccttaatttccttggaggcagcaacttcagaagatataggatcaacttgaacctcagtatta |
26034870 |
T |
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| Q |
316 |
t |
316 |
Q |
| |
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| |
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| T |
26034869 |
t |
26034869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 45909012 - 45908976
Alignment:
| Q |
153 |
ataataatttgaaaaatgaaagtaattgaatgtaatc |
189 |
Q |
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| T |
45909012 |
ataataatttgagaaatgaaagtaattgaatgtaatc |
45908976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 35871232 - 35871197
Alignment:
| Q |
153 |
ataataatttgaaaaatgaaagtaattgaatgtaatc |
189 |
Q |
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| T |
35871232 |
ataataatttgaaaaat-aaagtaattgaatgtaatc |
35871197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 24445433 - 24445398
Alignment:
| Q |
153 |
ataataatttgaaaaatgaaagtaattgaatgtaatc |
189 |
Q |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
24445433 |
ataataatttgaaaaat-aaagtaattgaatgtaatc |
24445398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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