View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17858_low_14 (Length: 286)

Name: NF17858_low_14
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17858_low_14
NF17858_low_14
[»] chr3 (21 HSPs)
chr3 (23-169)||(36370384-36370530)
chr3 (39-170)||(43999987-44000118)
chr3 (39-169)||(36749405-36749535)
chr3 (23-168)||(22894680-22894825)
chr3 (39-168)||(34749960-34750089)
chr3 (26-169)||(21559560-21559703)
chr3 (19-169)||(51339825-51339973)
chr3 (26-169)||(46111993-46112136)
chr3 (41-169)||(30735560-30735687)
chr3 (72-168)||(29460660-29460756)
chr3 (72-168)||(29471512-29471608)
chr3 (72-168)||(38231293-38231389)
chr3 (19-171)||(39467143-39467295)
chr3 (39-165)||(48200688-48200814)
chr3 (37-169)||(50966130-50966258)
chr3 (37-169)||(51069265-51069393)
chr3 (54-170)||(39072350-39072466)
chr3 (42-160)||(20856218-20856334)
chr3 (39-146)||(53638157-53638264)
chr3 (75-161)||(29820397-29820483)
chr3 (20-76)||(29472901-29472957)
[»] scaffold0062 (1 HSPs)
scaffold0062 (23-164)||(6722-6863)
[»] chr7 (25 HSPs)
chr7 (23-169)||(36346611-36346756)
chr7 (26-168)||(45782709-45782851)
chr7 (26-171)||(26972252-26972397)
chr7 (41-168)||(42221027-42221154)
chr7 (20-162)||(31148296-31148438)
chr7 (39-168)||(28307557-28307686)
chr7 (25-170)||(7700525-7700670)
chr7 (25-168)||(7699931-7700074)
chr7 (25-168)||(7700129-7700272)
chr7 (25-168)||(7700327-7700470)
chr7 (26-168)||(34108426-34108568)
chr7 (19-168)||(5811205-5811354)
chr7 (20-165)||(34828069-34828213)
chr7 (19-168)||(13108148-13108296)
chr7 (39-162)||(23980137-23980260)
chr7 (18-168)||(30887700-30887850)
chr7 (18-164)||(21807363-21807509)
chr7 (18-168)||(15020282-15020429)
chr7 (38-163)||(38321014-38321139)
chr7 (26-147)||(36957450-36957571)
chr7 (19-126)||(46475066-46475174)
chr7 (38-129)||(20086689-20086780)
chr7 (73-126)||(42950109-42950162)
chr7 (26-69)||(29953621-29953664)
chr7 (131-163)||(42950157-42950189)
[»] chr2 (11 HSPs)
chr2 (19-169)||(16089821-16089970)
chr2 (23-165)||(44958116-44958258)
chr2 (39-168)||(33732569-33732698)
chr2 (19-168)||(36315561-36315710)
chr2 (26-169)||(14572994-14573137)
chr2 (19-169)||(3830939-3831087)
chr2 (26-177)||(37498912-37499065)
chr2 (39-169)||(37914298-37914428)
chr2 (39-168)||(24137154-24137287)
chr2 (19-168)||(6376280-6376424)
chr2 (38-160)||(41188777-41188899)
[»] chr8 (15 HSPs)
chr8 (39-168)||(30432339-30432468)
chr8 (26-171)||(31318802-31318947)
chr8 (26-168)||(42162598-42162740)
chr8 (23-165)||(12665347-12665490)
chr8 (23-169)||(10203663-10203809)
chr8 (30-168)||(36189216-36189354)
chr8 (26-167)||(44081781-44081922)
chr8 (19-165)||(18184556-18184702)
chr8 (19-162)||(33726017-33726161)
chr8 (40-170)||(43186025-43186155)
chr8 (39-148)||(42668844-42668952)
chr8 (77-163)||(31547-31633)
chr8 (39-163)||(3690664-3690788)
chr8 (27-120)||(38845073-38845165)
chr8 (41-146)||(35849516-35849623)
[»] chr6 (7 HSPs)
chr6 (39-169)||(3986967-3987097)
chr6 (19-168)||(14022934-14023083)
chr6 (26-169)||(3118096-3118239)
chr6 (19-168)||(24208444-24208593)
chr6 (19-168)||(13697569-13697717)
chr6 (40-169)||(15345722-15345849)
chr6 (139-169)||(7674598-7674628)
[»] chr5 (17 HSPs)
chr5 (27-169)||(1815666-1815808)
chr5 (26-168)||(39370927-39371069)
chr5 (39-169)||(40888004-40888134)
chr5 (39-171)||(17225316-17225446)
chr5 (23-170)||(13347126-13347273)
chr5 (27-169)||(27553423-27553565)
chr5 (39-168)||(2237276-2237405)
chr5 (39-170)||(9408101-9408232)
chr5 (47-157)||(14831555-14831665)
chr5 (72-168)||(33404531-33404627)
chr5 (19-169)||(4300585-4300735)
chr5 (19-129)||(31800597-31800707)
chr5 (19-168)||(19596110-19596258)
chr5 (39-171)||(19124534-19124664)
chr5 (42-159)||(41003915-41004031)
chr5 (39-97)||(42683670-42683728)
chr5 (80-165)||(12164254-12164339)
[»] chr4 (15 HSPs)
chr4 (19-169)||(21390997-21391147)
chr4 (23-168)||(3672274-3672419)
chr4 (26-169)||(28093145-28093288)
chr4 (19-169)||(44275705-44275855)
chr4 (26-168)||(49243815-49243957)
chr4 (26-171)||(6112627-6112772)
chr4 (39-169)||(7217764-7217894)
chr4 (41-169)||(35544911-35545039)
chr4 (39-169)||(46192358-46192488)
chr4 (39-168)||(45829319-45829448)
chr4 (38-163)||(51038768-51038894)
chr4 (19-169)||(52191242-52191392)
chr4 (39-163)||(54849793-54849917)
chr4 (99-169)||(25437007-25437077)
chr4 (85-163)||(36157840-36157918)
[»] chr1 (9 HSPs)
chr1 (26-168)||(34307187-34307329)
chr1 (23-164)||(2509028-2509169)
chr1 (26-170)||(39249912-39250056)
chr1 (34-168)||(46901792-46901926)
chr1 (19-169)||(19258714-19258864)
chr1 (26-168)||(28647353-28647495)
chr1 (20-150)||(9642909-9643039)
chr1 (45-164)||(29099821-29099939)
chr1 (85-163)||(10146971-10147049)
[»] scaffold0043 (1 HSPs)
scaffold0043 (19-164)||(87204-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (103-141)||(5943-5981)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36370384 - 36370530
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36370384 cctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtggg 36370483  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370484 tgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 44000118 - 43999987
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44000118 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 44000019  T
Q  139 ccacctaaggtggttcatgtataagagctcta 170  Q
     |||||||||||||||||||||||||||||||    
T  44000018 acacctaaggtggttcatgtataagagctcta 43999987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 36749535 - 36749405
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36749535 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 36749436  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
     || |||||||||||||||||||||||||||    
T  36749435 acatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 22894825 - 22894680
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| |||||  ||||| ||||||| ||||||||||||||| |  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22894825 cctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 22894726  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  22894725 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 34749960 - 34750089
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  34749960 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatg 34750059  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||||||    
T  34750060 ccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 21559703 - 21559560
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||||||  ||||||||||||||||||||||||||| |||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  21559703 catgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgt 21559604  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| ||||||||||||||||| ||||| |||||||||||||||    
T  21559603 aaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 51339825 - 51339973
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||  ||||    
T  51339825 tacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtg 51339922  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  51339923 tgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 46111993 - 46112136
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||    
T  46111993 catgtattaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgt 46112092  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| |||||||| |||||||| |||||||||||||||| ||||    
T  46112093 aaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 30735560 - 30735687
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcc 140  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  30735560 ttttagtaatttaacatcatatcatcacc-ctttttatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgcc 30735658  T
Q  141 acctaaggtggttcatgtataagagctct 169  Q
    | |||||||||||||| ||||||||||||    
T  30735659 atctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 29460756 - 29460660
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 29471608 - 29471512
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 38231389 - 38231293
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38231389 ttttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 39467143 - 39467295
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||||||||||||| | ||||||||||||||| | |||| ||| ||||| ||||||||||||||||||||| |||||| ||| |||||||||| ||||    
T  39467143 tacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatatgtg 39467242  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 171  Q
    ||||||||||| |||||||| || ||| ||||||| ||| |||| ||||||||    
T  39467243 tgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctctaa 39467295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 165
Target Start/End: Complemental strand, 48200814 - 48200688
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| ||||||||||||||||||||||| |  |||||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||    
T  48200814 tatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatg 48200715  T
Q  139 ccacctaaggtggttcatgtataagag 165  Q
    ||||||||| || |||||| |||||||    
T  48200714 ccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 50966258 - 50966130
Alignment:
Q  37 aatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 136  Q
    ||||||||||||||||||||| ||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||    
T  50966258 aatattttagtaattttacattatatcatc--ct-ttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgta 50966162  T
Q  137 tgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| | |||||||||||||||||||    
T  50966161 tgccacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 51069393 - 51069265
Alignment:
Q  37 aatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 136  Q
    ||||||||||||||||||||| ||||||||  || |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||    
T  51069393 aatattttagtaattttacattatatcatc--ct-ttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgta 51069297  T
Q  137 tgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| | |||||||||||||||||||    
T  51069296 tgccacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 39072350 - 39072466
Alignment:
Q  54 acatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggtt 153  Q
    |||||| |||||||||  |||||||||||||||| ||||||| || ||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||    
T  39072350 acatcacatcatcacccattttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgatt 39072449  T
Q  154 catgtataagagctcta 170  Q
    ||||||||| |||||||    
T  39072450 catgtataatagctcta 39072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 20856218 - 20856334
Alignment:
Q  42 tttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 141  Q
    ||||||||||||| |||| ||||||| | ||||| || |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||    
T  20856218 tttagtaattttatatcacatcatcatc-ctttttatatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgcca 20856315  T
Q  142 cctaaggtggttcatgtat 160  Q
    ||||| |||||||||||||    
T  20856316 cctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 53638264 - 53638157
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||| |||||||||||| ||||||||| | | |||||||||||||| ||||||||  ||| |||||| | ||||||||||||| ||| ||||||||    
T  53638264 tattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatg 53638165  T
Q  139 ccacctaa 146  Q
    ||||||||    
T  53638164 ccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  75 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtata 161  Q
    ||||||||||||| ||||||||||  || | |||||| ||| ||||||||| |||  |||||||||||||||||||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 29472957 - 29472901
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttc 76  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||||    
T  29472957 acaccccatgtgttaggggtattttagtaattttacatcatatcatcatcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 6863 - 6722
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6863 cctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 6764  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  6763 tgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 36346611 - 36346756
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  36346611 cctcatgtgttaggggtattttagtaattttacatcatatcatcacct-ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctggg 36346709  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36346710 tgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 45782709 - 45782851
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45782709 catgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 45782808  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| | |||||||||||||| |||||| ||||||||||||||    
T  45782809 aaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 26972252 - 26972397
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  26972252 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgt 26972351  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  26972352 aaaagggtgtatgccacctaaggtggttcatgtataagagctctaa 26972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 42221027 - 42221154
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcc 140  Q
    |||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  42221027 ttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgcc 42221126  T
Q  141 acctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||||    
T  42221127 acctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 31148438 - 31148296
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgt 119  Q
    ||||| ||| |||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| || |||||||||||||||||    
T  31148438 acaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgt 31148339  T
Q  120 gggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 162  Q
    |||||||||| ||||||||||||||||| ||||||||||||||    
T  31148338 gggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 28307557 - 28307686
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  28307557 tattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatg 28307656  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||| ||| ||||||||||||||    
T  28307657 ccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 7700525 - 7700670
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7700525 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700624  T
Q  125 taaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 170  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  7700625 taaaagggtgtatgccatctaaggtggtttatgtataagagctcta 7700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7699931 - 7700074
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7699931 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700030  T
Q  125 taaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700031 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7700129 - 7700272
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7700129 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700228  T
Q  125 taaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700229 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 7700327 - 7700470
Alignment:
Q  25 tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtg 124  Q
    |||||||||| |  |||||||||||||||| |||||||||||| |  |||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  7700327 tcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtg 7700426  T
Q  125 taaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700427 taaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 34108568 - 34108426
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||  |||||||||| |||||||||||    
T  34108568 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgt 34108469  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  34108468 aaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 5811205 - 5811354
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5811205 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 5811304  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||||| |||| | ||||||||||||| ||||||| |||||||| |||||    
T  5811305 tgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 34828213 - 34828069
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgt 119  Q
    ||||| ||| |||||||  ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34828213 acaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt 34828114  T
Q  120 gggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 165  Q
    || ||||||| | |||||| |||| |||||||||||||||||||||    
T  34828113 ggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 13108296 - 13108148
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| |||| ||||||||||||||| ||||||| ||| |||||||||||||||    
T  13108296 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-catctcttctttcaacgtttttgccacatgtcacaaatgtgtg 13108198  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||| |||||||||| |||||||||||| |||||||| |||||    
T  13108197 tgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 23980260 - 23980137
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||| |||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  23980260 tattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 23980161  T
Q  139 ccacctaaggtggttcatgtataa 162  Q
    ||||||| ||||||| ||||||||    
T  23980160 ccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 30887850 - 30887700
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgt 117  Q
    ||||||| ||||| ||||   ||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||||||  ||||||||||||||| |    
T  30887850 atacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtat 30887751  T
Q  118 gtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  30887750 gtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 21807363 - 21807509
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgt 117  Q
    ||||||| || ||||||||  |||||||||||||| |||| | ||||||| |  |||||||||||||||||||| |||||| ||| | |||||||| |||    
T  21807363 atacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgt 21807462  T
Q  118 gtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 164  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21807463 gtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 15020429 - 15020282
Alignment:
Q  18 atacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgt 117  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||| ||||| | |||| ||||||||||||||||||||| ||  |||||||||  |||    
T  15020429 atacatctcatgtgttagggatattttagtaatttcacatcatatcttcacc-cctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgt 15020333  T
Q  118 gtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||||||||||| | ||||||||||||| ||||||| |||||||| |||||    
T  15020332 gtgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 38321139 - 38321014
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 137  Q
    ||||||||||| ||| |||||| | ||||||||| | |||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||| ||||||    
T  38321139 atattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtat 38321040  T
Q  138 gccacctaaggtggttcatgtataag 163  Q
    |||||||||| ||||| |||||||||    
T  38321039 gccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 36957571 - 36957450
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||| ||  ||||||||||||||||||| | || |||| |  ||||||||||||||| |||| ||||||||||||||||||||| ||| ||| |||    
T  36957571 catgtgttgggggtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgt 36957472  T
Q  126 aaaaaggtgtatgccacctaag 147  Q
    |||| |||||||||||||||||    
T  36957471 aaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 46475174 - 46475066
Alignment:
Q  19 tacacctcatgtgtta-ggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgt 117  Q
    |||| ||||||||||| ||  |||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  46475174 tacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcaccccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T
Q  118 gtgggtgta 126  Q
     ||||||||    
T  46475074 atgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 20086689 - 20086780
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 129  Q
    ||||||||||||||| |||||| ||||||||| ||||| ||||||||||| |||||||||| ||  |||| ||||||| |||||||||||||    
T  20086689 atattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  73 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 126  Q
    ||||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 29953621 - 29953664
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacc 69  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||    
T  29953621 catgtattagggatatttgagtaattttacatcatatcatcacc 29953664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 42950157 - 42950189
Alignment:
Q  131 ggtgtatgccacctaaggtggttcatgtataag 163  Q
    |||||||||||||||||||||||||||| ||||    
T  42950157 ggtgtatgccacctaaggtggttcatgtctaag 42950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 16089970 - 16089821
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||    
T  16089970 tacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtg 16089872  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16089871 tgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 44958258 - 44958116
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  44958258 cctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggg 44958159  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 165  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  44958158 tgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 33732698 - 33732569
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  33732698 tattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 33732599  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||||||    
T  33732598 ccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 36315710 - 36315561
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||||||||||| |||  ||||||| | |||| |||||| || |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  36315710 tacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 36315611  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36315610 tgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 3830939 - 3831087
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  ||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||||||  ||||    
T  3830939 tacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtg 3831036  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  3831037 tgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 37498912 - 37499065
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacc-tctttt-catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggt 123  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||    
T  37498912 catgtgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagt 37499011  T
Q  124 gtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaagaaata 177  Q
    |||||| | |||||||||  |||| ||||| || |||||||||||||| |||||    
T  37499012 gtaaaaggatgtatgccagttaagatggttgatatataagagctctaataaata 37499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 37914298 - 37914428
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||    
T  37914298 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatg 37914397  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||||||| |||||||| ||||||    
T  37914398 ccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 24137154 - 24137287
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg----ggtgtaaaaaggtg 134  Q
    |||||||||||||| |||||| ||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||    ||||| ||| ||||    
T  24137154 tattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaagggtg 24137253  T
Q  135 tatgccacctaaggtggttcatgtataagagctc 168  Q
    ||| ||||||||||||||| |||||||| |||||    
T  24137254 tataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 6376280 - 6376424
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||| ||||||||||||   |||||||||||||| |||||| ||| |||||  |||||||||||||||||||||     | ||| |||||||||||||||    
T  6376280 tacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattttcatctcttctttcaatg-----gccacatgtcacaaatgtgtg 6376374  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  6376375 tgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 41188899 - 41188777
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 137  Q
    |||||||||||||||||||||| ||||||| | |||||||| || | |||||||||||||| ||| ||||| |||| ||| | | | ||||| |||||||    
T  41188899 atattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtat 41188800  T
Q  138 gccacctaaggtggttcatgtat 160  Q
    | ||| ||| |||||||||||||    
T  41188799 gtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 30432468 - 30432339
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  30432468 tattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatg 30432369  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
    ||| ||||||||||||||||||||||||||    
T  30432368 ccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 31318947 - 31318802
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  31318947 catgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgt 31318848  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 171  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  31318847 aaaaagttatatgccacctaaggtggttcatgtataagagctctaa 31318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 42162740 - 42162598
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42162740 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgt 42162641  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  42162640 aaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 12665490 - 12665347
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacc-tcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgg 121  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||| |||||||||||||     
T  12665490 cctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtga 12665391  T
Q  122 gtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 165  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  12665390 gtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 10203809 - 10203663
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| ||||| ||||||||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  10203809 cctcatgtattagggatattttagtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtgga 10203710  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  10203709 tgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 36189354 - 36189216
Alignment:
Q  30 tgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 129  Q
    |||||||  ||||||| |||||||| |||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  36189354 tgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaa 36189255  T
Q  130 aggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
     ||||||||||||||||| ||||||||||||||||||||    
T  36189254 gggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 167
Target Start/End: Complemental strand, 44081922 - 44081781
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  44081922 catgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgt 44081823  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagct 167  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  44081822 aaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 18184702 - 18184556
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||   |||||||||||||| ||||    
T  18184702 tacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtg 18184603  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 165  Q
    ||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18184602 tggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 33726161 - 33726017
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatca-cctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgt 117  Q
    ||||| ||||||||||||  |||||||||||||| |||||| ||| ||| || |||||||||||||||||||||||||||| ||| |||||||||||| |    
T  33726161 tacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgtttttgccacatgtcacaaatgttt 33726062  T
Q  118 gtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 162  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||    
T  33726061 gtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 170
Target Start/End: Complemental strand, 43186155 - 43186025
Alignment:
Q  40 attttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgc 139  Q
    |||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||||||||  |||||||||  || |||||    
T  43186155 atttgagtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgc 43186056  T
Q  140 cacctaaggtggttcatgtataagagctcta 170  Q
    ||||||| |||||| |||||||||| |||||    
T  43186055 cacctaaagtggttgatgtataagaactcta 43186025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 42668844 - 42668952
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||| ||||||||| |||||||| |||||||||| | ||| |||||||| |||||||||| |||||||||||| ||||||||||||| |||  |||||||    
T  42668844 tattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatg 42668942  T
Q  139 ccacctaagg 148  Q
    ||||||||||    
T  42668943 ccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 163
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  77 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 163  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||  |||||||| ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 163
Target Start/End: Original strand, 3690664 - 3690788
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||| |||||||  || || ||||||||||| | ||||||||||||| ||| |||| |  || |||||||| ||||||||| | | ||| | ||||||    
T  3690664 tatttttgtaatttcgcaacacatcatcacctcatctcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatg 3690763  T
Q  139 ccacctaaggtggttcatgtataag 163  Q
     |||||||| || ||||||||||||    
T  3690764 tcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 38845073 - 38845165
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg 120  Q
    ||||||||||  ||||||||||||||  ||||| ||||||||| || || |||| |||||||||| |||||  ||| |||||||| ||||||||    
T  38845073 atgtgttagggttattttagtaatttctcatcacatcatcacccctctt-atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 146
Target Start/End: Original strand, 35849516 - 35849623
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgt--cacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||| | |||| |||||| || ||| ||||||||||||| ||| ||||| |  || ||||||||| |||||||  |||| ||| | ||||||    
T  35849516 ttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtgttaaatgatgtatg 35849615  T
Q  139 ccacctaa 146  Q
    ||||||||    
T  35849616 ccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 3986967 - 3987097
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  3986967 tatttgagtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 3987066  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||||||||||||||||||||||    
T  3987067 ccacctaaggtggttcatgtataagagctct 3987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 14023083 - 14022934
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| ||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||    
T  14023083 tacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgtgtg 14022984  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14022983 tgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 3118096 - 3118239
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  |||||||||||||||||||||| ||| ||||  |||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  3118096 catgtattaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgt 3118195  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| |||||||||||||||||||||||||| ||||||||||||    
T  3118196 aaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 24208593 - 24208444
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  |||||||||||||| |||||| ||| |||||  ||||||||||||||||||||||||||| ||| | |||||||||||||    
T  24208593 tacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacatatcacaaatgtgtg 24208494  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||||||||||  |||||| ||||||| | ||||| |||||||| |||||    
T  24208493 tgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 13697717 - 13697569
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| ||||||||||  ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||  ||||| ||||||||||||     
T  13697717 tacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccacgtatcacaaatgtgta 13697618  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    | ||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  13697617 t-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 15345722 - 15345849
Alignment:
Q  40 attttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgc 139  Q
    |||| |||||||| | ||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||  || |||||    
T  15345722 atttgagtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgc 15345819  T
Q  140 cacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||||| |||||||||||||||    
T  15345820 cacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 169
Target Start/End: Original strand, 7674598 - 7674628
Alignment:
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctct 7674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 1815666 - 1815808
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 126  Q
    ||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||    
T  1815666 atgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgta 1815765  T
Q  127 aaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||| |||||||| |||||||| |||||||||||||||||||||    
T  1815766 aaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 39371069 - 39370927
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39371069 catgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgt 39370970  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  39370969 aaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 169
Target Start/End: Original strand, 40888004 - 40888134
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||    
T  40888004 tattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatg 40888103  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||||||| |||||||||||||||    
T  40888104 ccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 17225446 - 17225316
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||    
T  17225446 tattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--gagtatg 17225349  T
Q  139 ccacctaaggtggttcatgtataagagctctaa 171  Q
    |||||||| ||||||||||||||||||||||||    
T  17225348 ccacctaaagtggttcatgtataagagctctaa 17225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 13347273 - 13347126
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| |||||  ||||| ||||||| ||||||||||||||||   ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  13347273 cctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 13347174  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 170  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13347173 tgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctcta 13347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 27553423 - 27553565
Alignment:
Q  27 atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 126  Q
    ||||||||||| ||||||||||||||||||||| || ||||||  ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27553423 atgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgta 27553522  T
Q  127 aaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||| ||| ||||||||||||  |||||||||||||||||||||    
T  27553523 aaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 2237405 - 2237276
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||    
T  2237405 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatg 2237306  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
     ||||||||||||||||||||||| |||||    
T  2237305 tcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 9408101 - 9408232
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||    
T  9408101 tatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatg 9408200  T
Q  139 ccacctaaggtggttcatgtataagagctcta 170  Q
     ||||| |||||||||||||||||||||||||    
T  9408201 tcacctgaggtggttcatgtataagagctcta 9408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 14831665 - 14831555
Alignment:
Q  47 taattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaa 146  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14831665 taattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaa 14831566  T
Q  147 ggtggttcatg 157  Q
    |||||||||||    
T  14831565 ggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  72 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 4300585 - 4300735
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||||||||||||||| |||||||| |||||| |||||| |||| ||||  |||| ||||||| |||||||||||||| ||  |||||||||| ||||    
T  4300585 tacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatatgtg 4300684  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| | | |||| |||||||  |||||||||||||||||||||    
T  4300685 tgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 31800707 - 31800597
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| |||||||||    
T  31800707 tacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccacgtgtcataaatgtgtg 31800608  T
Q  119 tgggtgtaaaa 129  Q
    |||||||||||    
T  31800607 tgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 19596110 - 19596258
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| ||||||| |||  || |||||| |||| |||| | || ||||| | |||||| |||||||||||||||||||| ||| ||||||||||||| |    
T  19596110 tacaccccatgtgtcaggggtagtttagtcatttcacattacattatcac-tattttcacctcttctttcaatgtttttgccacatgtcacaaatgtgcg 19596208  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19596209 tggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 39 - 171
Target Start/End: Original strand, 19124534 - 19124664
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||||||||||||||||||| |  ||||||||||||||| |||||||||| |||  ||||||| |||||||||||||  ||| |||||||    
T  19124534 tattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgt-caaatgtgtatg 19124631  T
Q  139 ccacctaaggtggttcatgtataagagctctaa 171  Q
    ||| ||||| | || ||||||||||| ||||||    
T  19124632 ccatctaagatagtccatgtataagaactctaa 19124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  42 tttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 141  Q
    |||||||||||||||||| ||||||| | ||||| || |||| ||||||| |||||| ||| ||||| |||||||| || |||||||| |||||||||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgcca 41004013  T
Q  142 cctaaggtggttcatgta 159  Q
    ||||| ||||||||||||    
T  41004014 cctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 42683728 - 42683670
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgttttt 97  Q
    |||||||||||||||||||||||||| || |  ||||||||||||||||||||||||||    
T  42683728 tattttagtaattttacatcatatcaccatcctttttcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 12164339 - 12164254
Alignment:
Q  80 tcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 165  Q
    ||||||||||||||||||| ||| || ||||| |||||||| || | |||   ||| ||||||||||| |||||||||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 21390997 - 21391147
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  ||||   |||||||||||||||||||| |||||| |||||||||||||||||||    
T  21390997 tacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtg 21391096  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  21391097 tgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 3672419 - 3672274
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| |||||  ||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  3672419 cctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgga 3672320  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672319 tgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 26 - 169
Target Start/End: Original strand, 28093145 - 28093288
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| |||| ||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  28093145 catgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgt 28093244  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  28093245 aaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 44275855 - 44275705
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| |||||||||||  |||||||||||||||||||||||||||||||  |||| ||||||||||||||| |||||| |||||||||||||||||||    
T  44275855 tacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtg 44275756  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    || |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  44275755 tgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 49243957 - 49243815
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  |||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||| |||||||||||||||||| |||    
T  49243957 catgtattaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgt 49243858  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  49243857 aaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 6112772 - 6112627
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||| ||||||||||||||||||||||| |  ||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  6112772 catgtattaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgt 6112673  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 171  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||    
T  6112672 aaaatggtgtatgccatctaaggtggttcatgtataagagctctaa 6112627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 7217894 - 7217764
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    |||||||||||||||||||||||||||||||  |||| ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| ||||||||    
T  7217894 tattttagtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatg 7217795  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    ||||||||||||||| |||||||||||||||    
T  7217794 ccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 35545039 - 35544911
Alignment:
Q  41 ttttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcc 140  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||| ||    
T  35545039 ttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtatacc 35544940  T
Q  141 acctaaggtggttcatgtataagagctct 169  Q
    ||||||| |||||||||||||||||||||    
T  35544939 acctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 46192488 - 46192358
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  46192488 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatg 46192389  T
Q  139 ccacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||| ||||||||||||||||||    
T  46192388 ccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 45829319 - 45829448
Alignment:
Q  39 tattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 138  Q
    ||||||| | |||| |||||| || |||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  45829319 tattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 45829418  T
Q  139 ccacctaaggtggttcatgtataagagctc 168  Q
     ||||||| |||||||||||||||||||||    
T  45829419 tcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 163
Target Start/End: Complemental strand, 51038894 - 51038768
Alignment:
Q  38 atattttagtaattttacatcatatcatcacctc-ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 136  Q
    ||||||||||||||| |||||| | ||||||| | ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||   ||||    
T  51038894 atattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgta 51038795  T
Q  137 tgccacctaaggtggttcatgtataag 163  Q
    |||||||||||||||| ||| ||||||    
T  51038794 tgccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 52191242 - 52191392
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| ||| |||||||| ||||||||||||||  ||||| ||||||| ||| | | |||  ||||||||||||||||||||| |||||||| | ||||    
T  52191242 tacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtg 52191341  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    ||| ||| ||||||| |||||||||||||||||| |||||||||| |||||    
T  52191342 tggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 163
Target Start/End: Complemental strand, 54849917 - 54849793
Alignment:
Q  39 tattttagtaattttacatcatatcatca-cctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 137  Q
    ||||||| |||||| |||||| ||||||| ||||| | |||||||||||||||| |||||||||| |||||||| || |||||||| | |||  |||||     
T  54849917 tattttaataatttcacatcacatcatcatcctctct-catctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtac 54849819  T
Q  138 gccacctaaggtggttcatgtataag 163  Q
    || | |||||||||||||||||||||    
T  54849818 gctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  99 tcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||| |||||||| ||||| ||| ||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  85 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 163  Q
    |||||||||||||||||||| |||||| | ||| || |||| |||  ||||||||||||||| || || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 34307187 - 34307329
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||||||  |||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||    
T  34307187 catgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgt 34307286  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||| ||||||||||||||||||||||| ||||||||||||||    
T  34307287 aaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 2509169 - 2509028
Alignment:
Q  23 cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtggg 122  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2509169 cctcatgtattagggatattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggg 2509070  T
Q  123 tgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 164  Q
    ||||||| | |||||| |||||||||||||||||||||||||    
T  2509069 tgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

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Target: chr1; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 39249912 - 39250056
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    ||||| |||||  ||||||||||||||||||| |||||| || |  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  39249912 catgtattaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgt 39250011  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 170  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||    
T  39250012 aaaagggtgtatgccacctaagatggttcatgtataagagctcta 39250056  T

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Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 168
Target Start/End: Original strand, 46901792 - 46901926
Alignment:
Q  34 aggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 133  Q
    |||| ||||| |||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |||    
T  46901792 aggagtatttgagtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggt 46901891  T
Q  134 gtatgccacctaaggtggttcatgtataagagctc 168  Q
    ||||| |||||||||||||||||||||||||||||    
T  46901892 gtatgtcacctaaggtggttcatgtataagagctc 46901926  T

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Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 19258714 - 19258864
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||||| |||||||||||||||||||| |||||| |||||| |||| |||| ||||||||||||| |||||||||||||| ||| |||||||||| | ||    
T  19258714 tacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatatatg 19258813  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 169  Q
    |||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  19258814 tgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

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Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 28647495 - 28647353
Alignment:
Q  26 catgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 125  Q
    |||||||||||||||||||| |||||| |||||| |||| |||| |||||||||| ||||||||||||||||| ||  | |||||||| |||||||||||    
T  28647495 catgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgt 28647396  T
Q  126 aaaaaggtgtatgccacctaaggtggttcatgtataagagctc 168  Q
    |||||| ||||||| |||| ||||||||||||||||| |||||    
T  28647395 aaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 9642909 - 9643039
Alignment:
Q  20 acacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt-tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 118  Q
    |||| |||||||| ||| || |||||||||||| |||||||||||||||| | || ||||||||||||||| ||||||||||| ||||||||| | ||||    
T  9642909 acacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtg 9643007  T
Q  119 tgggtgtaaaaaggtgtatgccacctaaggtg 150  Q
    ||||||| ||||||| ||||||| ||||||||    
T  9643008 tgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  45 agtaattttacatcatatcatcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacct 144  Q
    |||||||| |||||| ||||||||| ||||| || |||| |||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaaga-gtgtatgccatct 29099841  T
Q  145 aaggtggttcatgtataaga 164  Q
    ||||||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 163
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  85 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 163  Q
    ||||| |||||||| ||| |||||||| |||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 87204 - 87350
Alignment:
Q  19 tacacctcatgtgttaggaatattttagtaattttacatcatat--catcacctcttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtg 116  Q
    |||||| |||||||||||  |||||||||||||||| || ||||  ||||||   ||||||||||||||||||||||||||| |||||||||||||||||    
T  87204 tacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtg 87303  T
Q  117 tgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 164  Q
    ||| |||||| || ||||||||||||||||||||||||||||||||||    
T  87304 tgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  103 gtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 141  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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