View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_low_15 (Length: 285)
Name: NF17858_low_15
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 43065475 - 43065732
Alignment:
| Q |
1 |
catctgcgattgattacattataatgcttttgtttttctattcatgcacgtgtttaatcgcaattctgaatcctatcgnnnnnnnatttatgaatcgcta |
100 |
Q |
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| T |
43065475 |
catctgcgattgattacattataatgcttttgtttttcgattcatgcacatgtttaatcgcaattctgaatcctatcgtttttttatttatgaatcgcta |
43065574 |
T |
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| Q |
101 |
gttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcattttaacattaccatgccattattatattatcgtaatgnnnnnnnnnna |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43065575 |
gttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcattttaacattaccatgccattattatattatcgtaatg--tttttttta |
43065672 |
T |
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| Q |
201 |
gttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43065673 |
gttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgtata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
129 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
179 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43047439 - 43047402
Alignment:
| Q |
1 |
catctgcgattgattacattataatgcttttgtttttc |
38 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43047439 |
catctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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