View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17858_low_2 (Length: 687)
Name: NF17858_low_2
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_low_2 |
 | |
|
| [»] scaffold1738 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 236 - 669
Target Start/End: Complemental strand, 55330965 - 55330532
Alignment:
| Q |
236 |
tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
55330965 |
tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaatgaaagatattgaagattatgaaagacttggaaat |
55330866 |
T |
|
| Q |
336 |
atagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcag |
435 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55330865 |
atagcattaaaggttaataagagtttagcaactgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcag |
55330766 |
T |
|
| Q |
436 |
ctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtgg |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55330765 |
ctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtgg |
55330666 |
T |
|
| Q |
536 |
tggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggct |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55330665 |
tggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggct |
55330566 |
T |
|
| Q |
636 |
ttgatgttgggaagaaatgtttctgagatgagag |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
55330565 |
ttgatgttgggaagaaatgtttctgagatgagag |
55330532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 55331200 - 55331017
Alignment:
| Q |
1 |
caagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggagaaagttttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55331200 |
caagattattcaaacatcttcgaagccaaatcgaaaacacagttgctcttggaaatcaaacagaacaagatgtgaagtgtttcatggagaaagttttggc |
55331101 |
T |
|
| Q |
101 |
acttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55331100 |
acttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc |
55331017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 236 - 662
Target Start/End: Complemental strand, 55336403 - 55335971
Alignment:
| Q |
236 |
tagtaataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaat |
335 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||||| || | ||||| |||||||| ||||| |||||||||||| |
|
|
| T |
55336403 |
tagtaaaaatggatggagtgaagaattagaaatggaaatgagggaagttattgaagttgtaaagagtaaagacattgaagactatgagagacttggaaat |
55336304 |
T |
|
| Q |
336 |
atagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaac-------aattct |
428 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
55336303 |
atagcattgaagattaacaagagtatggcaatagcaggtccattactcactggaattgcagcaataggttctgcatttgtaggaaacgacgacggatttt |
55336204 |
T |
|
| Q |
429 |
gttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaa |
528 |
Q |
| |
|
| | ||||||| || || | ||||| || ||| | | | || | | |||| |||||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
55336203 |
ggt-cagctatggtacctgtgatggcaggatcaatggcttgtgcaatcaatggttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaa |
55336105 |
T |
|
| Q |
529 |
attgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaa |
628 |
Q |
| |
|
| ||||||||||| ||||| |||| | ||||| | |||| ||| | || ||||||||||| || | ||||||||||| ||| ||||||||||||| |
|
|
| T |
55336104 |
actgtggtggattttttaagatgtttggagagagtattgaaagcacacttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaa |
55336005 |
T |
|
| Q |
629 |
aatggctttgatgttgggaagaaatgtttctgag |
662 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||| |
|
|
| T |
55336004 |
aatggcattgatgttaggaagaagtgtttctgag |
55335971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 85 - 187
Target Start/End: Complemental strand, 55336551 - 55336449
Alignment:
| Q |
85 |
tggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggcc |
184 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| | ||||| | |||||||||||| ||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55336551 |
tggagaaagtgttggcacttgacaaagcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaaccttctgtttggtggcc |
55336452 |
T |
|
| Q |
185 |
tgc |
187 |
Q |
| |
|
||| |
|
|
| T |
55336451 |
tgc |
55336449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 6e-42; HSPs: 27)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 240 - 651
Target Start/End: Original strand, 8375852 - 8376263
Alignment:
| Q |
240 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag |
339 |
Q |
| |
|
|||||||| |||||| | ||||| |||| |||| |||| |||||| ||||||| | || | ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
8375852 |
aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag |
8375951 |
T |
|
| Q |
340 |
cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaacaattctgttgcagctat |
439 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || || |||||||||| | |||| | || ||| | |
|
|
| T |
8375952 |
cattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatcgacatttgtaggtagtggttctttggctgcttt |
8376051 |
T |
|
| Q |
440 |
agttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtgga |
539 |
Q |
| |
|
||| || | ||||||||||||| | | ||||| | ||| ||||||| |||||||||||| |||| ||||| ||||||||||||||| || |||||| |
|
|
| T |
8376052 |
tgttcctcttttggctggttcattggcttctgtaattaatacttttgagcatggtggacaagttggcatggtttttgaaatgtatagagcttctggtggt |
8376151 |
T |
|
| Q |
540 |
ttccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttga |
639 |
Q |
| |
|
||| | || || | ||| | ||||| ||| |||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8376152 |
ttcttcaacttgatagaaacttcaattgattcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgc |
8376251 |
T |
|
| Q |
640 |
tgttgggaagaa |
651 |
Q |
| |
|
|||||||||| |
|
|
| T |
8376252 |
aattgggaagaa |
8376263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 240 - 667
Target Start/End: Complemental strand, 8406037 - 8405607
Alignment:
| Q |
240 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag |
339 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || ||| ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
8406037 |
aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag |
8405938 |
T |
|
| Q |
340 |
cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaa---caattctgttgcagc |
436 |
Q |
| |
|
| || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||||| | || || | |||| | || || |
|
|
| T |
8405937 |
ctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgc |
8405838 |
T |
|
| Q |
437 |
tatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggt |
536 |
Q |
| |
|
| ||| || | ||||||||||||| | | ||| | | ||| |||||||||||||||||||| |||| ||||| ||||||||||||||| || || | |
|
|
| T |
8405837 |
atttgttcctctcttggctggttcattggcttctgcaatcaatacttttgaacatggtggacaagttggcatggtttttgaaatgtatagagcttctgct |
8405738 |
T |
|
| Q |
537 |
ggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctt |
636 |
Q |
| |
|
|| || | || |||| ||| | |||| ||| |||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8405737 |
ggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctt |
8405638 |
T |
|
| Q |
637 |
tgatgttgggaagaaatgtttctgagatgag |
667 |
Q |
| |
|
|| |||||||||| ||| |||||| |||| |
|
|
| T |
8405637 |
tgcaattgggaagaagtgtatctgagctgag |
8405607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 240 - 651
Target Start/End: Original strand, 8395535 - 8395949
Alignment:
| Q |
240 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag |
339 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| |||| |||||| |||| || || ||| ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
8395535 |
aataatggatggagtgaagaattggaaatggaaatgagggaagttgttgacgtggtaaaacgaaaagacgctgaagattatgacagacttggaaacatag |
8395634 |
T |
|
| Q |
340 |
cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtaggaaa---caattctgttgcagc |
436 |
Q |
| |
|
| || ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| || ||| ||||| | || || | |||| | || || |
|
|
| T |
8395635 |
ctttgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctattggatctacatttattggcaatggtagttctttggctgc |
8395734 |
T |
|
| Q |
437 |
tatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggt |
536 |
Q |
| |
|
| ||| || | ||||||||||||| | | ||| | | ||| ||||||||||||||||||||||||| ||||| ||||||||||||||| || || | |
|
|
| T |
8395735 |
atttgttcctctcttggctggttcattggcttctgcaataaatacttttgaacatggtggacaaattggcatggtttttgaaatgtatagagcttctgat |
8395834 |
T |
|
| Q |
537 |
ggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctt |
636 |
Q |
| |
|
|| || | || || | ||| | |||| ||| |||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8395835 |
ggtttattcaacttgatagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctt |
8395934 |
T |
|
| Q |
637 |
tgatgttgggaagaa |
651 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
8395935 |
tgcaattgggaagaa |
8395949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 311 - 651
Target Start/End: Complemental strand, 8412083 - 8411743
Alignment:
| Q |
311 |
tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca |
410 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| || |
|
|
| T |
8412083 |
tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca |
8411984 |
T |
|
| Q |
411 |
tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg |
510 |
Q |
| |
|
|||||||| || | |||| | || || | ||| || || || |||||||||| | | ||| || ||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
8411983 |
tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg |
8411884 |
T |
|
| Q |
511 |
tatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatgg |
610 |
Q |
| |
|
| ||||||||||||||| || || ||| || | || |||| ||| | |||| ||| |||| |||||||||||| |||| ||||||||||| |
|
|
| T |
8411883 |
tttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatgg |
8411784 |
T |
|
| Q |
611 |
agagttatttgaaatgaaaatggctttgatgttgggaagaa |
651 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
8411783 |
agagctatttgaattgaaaatggctttgcgattgggaagaa |
8411743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 311 - 651
Target Start/End: Complemental strand, 8434181 - 8433841
Alignment:
| Q |
311 |
tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca |
410 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || || ||| || |
|
|
| T |
8434181 |
tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagcaattggatctaca |
8434082 |
T |
|
| Q |
411 |
tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg |
510 |
Q |
| |
|
|||||||| || | |||| | || || | ||| || || || |||||||||| | | ||| || ||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
8434081 |
tttgtaggcaatagttctttggctgcatttgttcctctattgactggttcattggcttctgctgttaatacttttgagcatggtggacaagttggcatgg |
8433982 |
T |
|
| Q |
511 |
tatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatgg |
610 |
Q |
| |
|
| ||||||||||||||| || || ||| || | || |||| ||| | |||| ||| |||| |||||||||||| |||| ||||||||||| |
|
|
| T |
8433981 |
tttttgaaatgtatagagcttctgctggttttttcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatgg |
8433882 |
T |
|
| Q |
611 |
agagttatttgaaatgaaaatggctttgatgttgggaagaa |
651 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
8433881 |
agagctatttgaattgaaaatggctttgcgattgggaagaa |
8433841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 248 - 413
Target Start/End: Complemental strand, 8431285 - 8431120
Alignment:
| Q |
248 |
atggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatagcattaaag |
347 |
Q |
| |
|
||||||||| |||||||||| |||| |||| || ||| ||||||| | || | ||||| ||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
8431285 |
atggagtgaagaattagaaatggaaatgagggatgttgttgaagtgataaagagaaaagacgttgaagattatgatagacttggaaacatagcattgaag |
8431186 |
T |
|
| Q |
348 |
gttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcattt |
413 |
Q |
| |
|
|| ||||||||||| |||||||| || ||||||||| | ||||||||||||||||| ||| ||||| |
|
|
| T |
8431185 |
gtaaacaagagtttggcaattgcagggccattactctcaggaattgcagctataggatctacattt |
8431120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 311 - 655
Target Start/End: Complemental strand, 8417164 - 8416823
Alignment:
| Q |
311 |
tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgca |
410 |
Q |
| |
|
|||||||||| | || |||||||| ||||| || ||||| ||||||||||||||||||| || ||||||||||| |||||||| ||||| || ||| || |
|
|
| T |
8417164 |
tgaagattataacaggcttggaaacatagctttgaaggtagacaagagtttagcaattgcagggccattactcacaggaattgccgctattggatctaca |
8417065 |
T |
|
| Q |
411 |
tttgtaggaaacaattctgttgcagctatagttgctttaatggctggttcattaggtgctgtagtgaatgcttttgaacatggtggacaaattggtatgg |
510 |
Q |
| |
|
||| |||| || ||| | || || | ||| || || ||||||||||||| | | ||| ||| ||| ||||||| |||||||||||| |||| |||| |
|
|
| T |
8417064 |
tttataggcaatggctctttggctgcctttgttcctctattggctggttcattggcttctgcagttaatacttttgagcatggtggacaagttggcatgg |
8416965 |
T |
|
| Q |
511 |
tatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatgg |
610 |
Q |
| |
|
| ||||||||||| || || |||||| || | || |||| ||| | |||| ||| |||| |||||||||||| |||| ||||||||||| |
|
|
| T |
8416964 |
tttttgaaatgtagagc--ttctggtggtttt-tcaacttgttagaaacttcaattgaatcaactttgggagagaaagatttagagaaaagagaaaatgg |
8416868 |
T |
|
| Q |
611 |
agagttatttgaaatgaaaatggctttgatgttgggaagaaatgt |
655 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8416867 |
agagctatttgaaatgaaaatggctttgcaattgggaagaaatgt |
8416823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 400
Target Start/End: Complemental strand, 8439251 - 8439091
Alignment:
| Q |
240 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag |
339 |
Q |
| |
|
|||||||| |||||| | ||||| |||| |||| |||| |||||| ||||||| | || | ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
8439251 |
aataatgggtggagtaaagaattggaaatggaaatgagggaagttgttgaagtgataaagagaaaagacgctgaagattatgacagacttggaaacatag |
8439152 |
T |
|
| Q |
340 |
cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctat |
400 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
8439151 |
cattgaaggtaaacaagagtttggcaattgcagggccattgctcacaggaattgcagctat |
8439091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 311 - 397
Target Start/End: Complemental strand, 8417301 - 8417215
Alignment:
| Q |
311 |
tgaagattatgaaagacttggaaatatagcattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagc |
397 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| |
|
|
| T |
8417301 |
tgaagattatgacagacttggaaacatagcgttgaaggtaaacaagagtttggcaattgcagggccattactcacaggaattgcagc |
8417215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 592
Target Start/End: Complemental strand, 8403837 - 8403726
Alignment:
| Q |
481 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga |
580 |
Q |
| |
|
||||||| ||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||| || |||| ||||||||||| ||||| |||| | || |
|
|
| T |
8403837 |
cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattga |
8403738 |
T |
|
| Q |
581 |
agagaaagattt |
592 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8403737 |
agagaaagattt |
8403726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 8395391 - 8395492
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||||||||| |||||||||| | | |||||| |||||||| |
|
|
| T |
8395391 |
atggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggc |
8395490 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8395491 |
ct |
8395492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 8406181 - 8406080
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||||||||| |||||||||| | | |||||| |||||||| |
|
|
| T |
8406181 |
atggaaaaagttttggcccttgacaaagcatatccacttccattattaggagcaatgcttgaaaaataccctgcaaaatttgagcctgctacttggtggc |
8406082 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8406081 |
ct |
8406080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 240 - 418
Target Start/End: Complemental strand, 8404078 - 8403900
Alignment:
| Q |
240 |
aataatggatggagtgaggaattagaaaaggaattgagagaagttattgaagttgtgaaaaagaaagatattgaagattatgaaagacttggaaatatag |
339 |
Q |
| |
|
||||||||||||| | ||| || ||||| ||| ||| || || |||||||| ||||| | ||||||||||| |||||||| ||| | || ||||| | |
|
|
| T |
8404078 |
aataatggatggaatttggagttggaaaatgaaatgaaggaggtaattgaagtggtgaagagaaaagatattgaggattatgagagattagggaatattg |
8403979 |
T |
|
| Q |
340 |
cattaaaggttaacaagagtttagcaattgctggtccattactcactggaattgcagctataggttctgcatttgtagg |
418 |
Q |
| |
|
|||||||| |||||||||||||||||||| || || || | || ||||||||||||||||| || |||||||||| |
|
|
| T |
8403978 |
cattaaagattaacaagagtttagcaattttaggacctttgttaacaggaattgcagctatagggtcatcatttgtagg |
8403900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 576 - 638
Target Start/End: Complemental strand, 8430969 - 8430907
Alignment:
| Q |
576 |
ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttg |
638 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
8430969 |
ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttg |
8430907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 542
Target Start/End: Complemental strand, 8368164 - 8368103
Alignment:
| Q |
481 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
542 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
8368164 |
cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
8368103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 542
Target Start/End: Original strand, 8401246 - 8401307
Alignment:
| Q |
481 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
542 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
8401246 |
cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
8401307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 542
Target Start/End: Original strand, 8422823 - 8422884
Alignment:
| Q |
481 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattc |
542 |
Q |
| |
|
||||||| |||||||||||| |||||||||| | ||||||||||||| ||||||||||||| |
|
|
| T |
8422823 |
cttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggattc |
8422884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 8439398 - 8439297
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| || |||||||||||||| ||||| || || ||||||||||| || | ||||||||||||| ||| |||||| | |||||||| |||||||| |
|
|
| T |
8439398 |
atggaaaaggttttggcacttgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc |
8439299 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8439298 |
ct |
8439297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 651
Target Start/End: Original strand, 8401365 - 8401416
Alignment:
| Q |
600 |
agagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa |
651 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||||||||| |||||||||| |
|
|
| T |
8401365 |
agagaaaatggagatttatttgaaattaaattggctttgaaattgggaagaa |
8401416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 8368541 - 8368479
Alignment:
| Q |
110 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
172 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||| |||||||||| ||| ||||||| ||||||| |
|
|
| T |
8368541 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
8368479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 8400869 - 8400931
Alignment:
| Q |
110 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
172 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||| |||||||||| ||| ||||||| ||||||| |
|
|
| T |
8400869 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
8400931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 8404231 - 8404185
Alignment:
| Q |
87 |
gagaaagttttggcacttgacaaagcttatccacttcctttattagg |
133 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
8404231 |
gagaaggttttggctcttgataaagcctatccacttcctttattagg |
8404185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 8422446 - 8422508
Alignment:
| Q |
110 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
172 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||| |||||||||| ||| ||||||| ||||||| |
|
|
| T |
8422446 |
agcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
8422508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 8431064 - 8431018
Alignment:
| Q |
481 |
cttttgaacatggtggacaaattggtatggtatttgaaatgtataga |
527 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
8431064 |
cttttgagcatggtggacaagttggcatggtttttgaaatgtataga |
8431018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 8375705 - 8375806
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| || ||||||||| |||| ||||| || || ||||||||||| || | ||||||||||||| ||| |||||| | |||||||| |||||||| |
|
|
| T |
8375705 |
atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc |
8375804 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8375805 |
ct |
8375806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 8412301 - 8412200
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| || ||||||||| |||| ||||| || || ||||||||||| || | ||||||||||||| ||| |||||| | |||||||| |||||||| |
|
|
| T |
8412301 |
atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc |
8412202 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8412201 |
ct |
8412200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 8434399 - 8434298
Alignment:
| Q |
84 |
atggagaaagttttggcacttgacaaagcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgctgtttggtggc |
183 |
Q |
| |
|
||||| || ||||||||| |||| ||||| || || ||||||||||| || | ||||||||||||| ||| |||||| | |||||||| |||||||| |
|
|
| T |
8434399 |
atggaaaaggttttggcaattgataaagcataccctcttcctttattgggagcaatgcttgaaaaatacccttcaaaatttgaacctgctaattggtggc |
8434300 |
T |
|
| Q |
184 |
ct |
185 |
Q |
| |
|
|| |
|
|
| T |
8434299 |
ct |
8434298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 651
Target Start/End: Original strand, 20 - 95
Alignment:
| Q |
576 |
ttggaagagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaa |
651 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
20 |
ttgggagagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaa |
95 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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