View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17858_low_3 (Length: 673)

Name: NF17858_low_3
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17858_low_3
NF17858_low_3
[»] chr7 (20 HSPs)
chr7 (24-278)||(29625370-29625643)
chr7 (588-673)||(36346564-36346650)
chr7 (584-673)||(34828171-34828260)
chr7 (587-670)||(13108256-13108339)
chr7 (587-673)||(45782658-45782745)
chr7 (579-670)||(46475133-46475225)
chr7 (586-670)||(5811161-5811245)
chr7 (587-673)||(28307493-28307580)
chr7 (587-673)||(42220962-42221048)
chr7 (587-673)||(26972201-26972288)
chr7 (587-673)||(34108532-34108619)
chr7 (588-673)||(7699882-7699968)
chr7 (588-673)||(7700080-7700166)
chr7 (588-673)||(7700278-7700364)
chr7 (588-673)||(7700476-7700562)
chr7 (630-673)||(15020385-15020428)
chr7 (586-673)||(31148396-31148483)
chr7 (587-668)||(36957540-36957620)
chr7 (586-670)||(23980240-23980324)
chr7 (586-663)||(42950034-42950111)
[»] chr1 (7 HSPs)
chr1 (15-262)||(10412215-10412476)
chr1 (24-279)||(10417947-10418219)
chr1 (587-673)||(34307136-34307223)
chr1 (587-673)||(2509130-2509217)
chr1 (590-673)||(39249864-39249948)
chr1 (21-107)||(10421861-10421947)
chr1 (587-670)||(28647462-28647545)
[»] chr2 (14 HSPs)
chr2 (26-153)||(30633097-30633224)
chr2 (26-153)||(30660826-30660953)
chr2 (26-154)||(30669505-30669633)
chr2 (586-673)||(16089927-16090014)
chr2 (584-673)||(37498858-37498948)
chr2 (587-673)||(33732675-33732761)
chr2 (586-673)||(44958219-44958307)
chr2 (591-670)||(3830900-3830979)
chr2 (586-670)||(6376236-6376320)
chr2 (585-670)||(36315670-36315756)
chr2 (637-673)||(14573101-14573137)
chr2 (26-88)||(30631057-30631119)
chr2 (159-223)||(30633012-30633076)
chr2 (159-223)||(30660741-30660805)
[»] chr4 (9 HSPs)
chr4 (588-673)||(21390955-21391040)
chr4 (587-673)||(44275812-44275898)
chr4 (590-673)||(35545018-35545102)
chr4 (587-673)||(7217871-7217958)
chr4 (584-673)||(6112736-6112825)
chr4 (588-673)||(49243921-49244006)
chr4 (588-673)||(3672380-3672466)
chr4 (587-673)||(28093094-28093181)
chr4 (588-663)||(52191200-52191275)
[»] chr5 (16 HSPs)
chr5 (24-147)||(35364670-35364793)
chr5 (31-144)||(35752630-35752743)
chr5 (24-138)||(35404400-35404514)
chr5 (587-673)||(31800664-31800750)
chr5 (586-670)||(27553372-27553455)
chr5 (24-107)||(35374256-35374339)
chr5 (587-673)||(42683705-42683792)
chr5 (588-673)||(1815619-1815701)
chr5 (587-673)||(40887940-40888027)
chr5 (588-673)||(13347234-13347320)
chr5 (588-673)||(39371033-39371119)
chr5 (17-109)||(35421516-35421608)
chr5 (159-278)||(35404239-35404364)
chr5 (17-109)||(35434861-35434953)
chr5 (589-670)||(4300544-4300625)
chr5 (162-226)||(35364567-35364634)
[»] scaffold0043 (1 HSPs)
scaffold0043 (586-665)||(87160-87239)
[»] chr8 (10 HSPs)
chr8 (587-673)||(18184659-18184745)
chr8 (21-121)||(13563200-13563300)
chr8 (586-673)||(30432445-30432532)
chr8 (586-673)||(36189322-36189408)
chr8 (586-673)||(12665451-12665539)
chr8 (588-673)||(10203770-10203856)
chr8 (588-670)||(33726121-33726203)
chr8 (588-673)||(42162704-42162790)
chr8 (589-663)||(38845023-38845098)
chr8 (586-673)||(43186133-43186220)
[»] chr3 (13 HSPs)
chr3 (584-673)||(29472915-29473004)
chr3 (586-673)||(51339781-51339868)
chr3 (588-673)||(21559667-21559753)
chr3 (588-673)||(46111943-46112029)
chr3 (24-135)||(1153036-1153147)
chr3 (587-673)||(30735494-30735581)
chr3 (584-673)||(44000095-44000185)
chr3 (590-673)||(36749512-36749596)
chr3 (587-673)||(48200791-48200878)
chr3 (588-673)||(36370337-36370423)
chr3 (589-673)||(22894786-22894870)
chr3 (583-663)||(39467096-39467176)
chr3 (587-673)||(34749896-34749983)
[»] chr6 (5 HSPs)
chr6 (587-671)||(3118045-3118130)
chr6 (589-670)||(14023043-14023124)
chr6 (587-670)||(24208553-24208636)
chr6 (587-673)||(13697674-13697760)
chr6 (585-673)||(15345656-15345744)
[»] scaffold0062 (1 HSPs)
scaffold0062 (588-673)||(6824-6910)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 278
Target Start/End: Original strand, 29625370 - 29625643
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcag 123  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||  |  || | ||| ||||| |||||||||||||||||||| || ||||||||||    
T  29625370 tgccattcacagaaatgtaaagactcattccatgatggcagagaatccgacaccccattcgtaagcttttccttcaaagcaagcaaagcgagcttatcag 29625469  T
Q  124 tgtgtgaactcaaagcaagagcaattgttgctaat---------------aacatttggctagcaaagcaaagaagaaaagacataaaaattctcatttt 208  Q
    ||| ||||||| ||| || ||||| ||||||||||               |||||||| || |||||||| ||||||||     ||||||||||||||||    
T  29625470 tgtctgaactcgaagaaatagcaaatgttgctaatggccagtcatacaccaacatttgacttgcaaagcagagaagaaacattgtaaaaattctcatttt 29625569  T
Q  209 gctattggagaatatgtaatatgggtaaccaaataaca----cttctagtgcatatgcagctttgagatatgat 278  Q
    |||| ||||||||||||| |||||||||| |||||| |    |||||| |||||||||||||||||||| ||||    
T  29625570 gctagtggagaatatgtattatgggtaacaaaataataatatcttctaatgcatatgcagctttgagatttgat 29625643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 36346564 - 36346650
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| |||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatat 36346650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 34828260 - 34828171
Alignment:
Q  584 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | ||| |||||||||||||||||||||||||||||||||    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatat 34828171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 670
Target Start/End: Complemental strand, 13108339 - 13108256
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||||||| |||||||| ||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||| ||||||    
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatca 13108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 45782658 - 45782745
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||| ||||| ||||||  ||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatat 45782745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 579 - 670
Target Start/End: Complemental strand, 46475225 - 46475133
Alignment:
Q  579 taagaaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgtta-ggggtattttagtaattttacatca 670  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||  |  |||||||||||||||||| |||||||||||||||||| ||||||    
T  46475225 taagatataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatca 46475133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 5811161 - 5811245
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| ||||||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatca 5811245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 28307493 - 28307580
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||| |||||||||||||||  || |||||| | | || ||||| |||||||||||||||||||||||||||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatat 28307580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 42220962 - 42221048
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggta-ttttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||||||| |||||||||| || ||||||   ||||||||||||||| |||||||||||| |||||||||    
T  42220962 aggaaaaagataggtagacacctttt-tcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatat 42221048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 26972201 - 26972288
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||||||||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatat 26972288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 34108619 - 34108532
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| || ||||| |||||||||||| ||||||||||||||||||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatat 34108532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 7699882 - 7699968
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatat 7699968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 7700080 - 7700166
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatat 7700166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 7700278 - 7700364
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatat 7700364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 7700476 - 7700562
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatat 7700562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 630 - 673
Target Start/End: Complemental strand, 15020428 - 15020385
Alignment:
Q  630 tacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||||||||| |||||||||||||| |||||||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatat 15020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 31148483 - 31148396
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||||  |||||||||||||  || |  ||| | ||| |||||||  ||||||||||||||||||||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatat 31148396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 668
Target Start/End: Complemental strand, 36957620 - 36957540
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacat 668  Q
    ||||||||||||| |||||||  ||||| ||||||| ||  | |||| | |||||||| |||||||||||||||||||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacat 36957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 586 - 670
Target Start/End: Complemental strand, 23980324 - 23980240
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    |||||||||||||| |||||| | ||||| |||||   |   |||||||||||| |||||| |||||||||||||||| ||||||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatca 23980240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 586 - 663
Target Start/End: Original strand, 42950034 - 42950111
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 663  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| | ||||| | |||||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 10412215 - 10412476
Alignment:
Q  15 tcaacaccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggcta 114  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||  | || | |||||| ||||||||| |||||||||||||||||||| ||      
T  10412215 tcaactccctgccattcacagaaatgtagagactcattccatgatggcaaagaatcttgtacaccatttgtaagcttttccttcaaagcaagcaaagcat 10412314  T
Q  115 gcttatcagtgtgtgaactcaaagcaagagcaattgttgctaat---------------aacatttggctagcaaagcaaagaagaaaagacataaaaat 199  Q
    ||| |||| |   ||||||||||||||||| ||  || ||| ||               ||||||||||| | |||||| ||||| || | |||||||||    
T  10412315 gctcatcaatcgctgaactcaaagcaagagtaacagtagctgatggcatgtaatgcatgaacatttggctggaaaagcagagaagtaacgtcataaaaat 10412414  T
Q  200 tctcattttgctattggagaatatgtaatatgggtaaccaaataacacttctagtgcatatgc 262  Q
    ||||||||| |||||  ||||||||||| |||||||||||||  | |||||||||||||||||    
T  10412415 tctcatttttctatt-tagaatatgtaacatgggtaaccaaaagatacttctagtgcatatgc 10412476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 10417947 - 10418219
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcag 123  Q
    ||||| |||||||||||||||||||| ||| |||||||||  | || |||||||| ||||||||| |||||||||||||||||||| ||  |||||||||    
T  10417947 tgccaatcacagaaatgtagagactcattctatgatggcaaagaatctggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcag 10418046  T
Q  124 tgtgtgaactcaaagcaagagcaattgttgctaat------------------aacatttggctagcaaagcaaagaagaaaagacataaaaattctcat 205  Q
    | | || |||||||||| ||||||  || ||| ||                  ||||||||| |||||||||| ||||| || | |||||||||||||||    
T  10418047 tctctgtactcaaagcatgagcaacagtcgctgatggcatgtaataaaacacgaacatttggatagcaaagcagagaagtaatgtcataaaaattctcat 10418146  T
Q  206 tttgctattggagaatatgtaatatgggtaaccaaataacacttctagtgcatatgcagctttgagatatgata 279  Q
    |||||||||  ||||||| |||||||||||||||||||| | ||  ||||||||| | ||||| | ||||||||    
T  10418147 tttgctatt-aagaatatttaatatgggtaaccaaataatagtttgagtgcatatactgctttaatatatgata 10418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 34307136 - 34307223
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||| || |||||||||||||||||||||||||||||||||||||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatat 34307223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 2509217 - 2509130
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| ||||||| ||||||||||||||  || |||||| | |||||| |||||| ||||||||||||||||||||||||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatat 2509130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 590 - 673
Target Start/End: Original strand, 39249864 - 39249948
Alignment:
Q  590 aaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||| ||||||||||||||||||||||  || ||||||  | ||||| |||||||||||||||||||||||||| ||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatat 39249948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 10421861 - 10421947
Alignment:
Q  21 ccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagc 107  Q
    |||||||| |||||||||| ||||||||| |||||||||||||  | || |||||||| |||||||||  |||| ||||||||||||    
T  10421861 ccctgccactcacagaaatatagagactcattccatgatggcaaagaatctggtacaccatttgtaagcgtttctttcaaagcaagc 10421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 670
Target Start/End: Complemental strand, 28647545 - 28647462
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||||||| |||||||| ||||| ||||| |  |  |||||||| |||||||||||  ||||||| |||||| ||||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatca 28647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 30633224 - 30633097
Alignment:
Q  26 ccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtg 125  Q
    |||||||||||||||||||||||| |||||||||||||    || || ||||| ||||||||| |||||||||||||||||||| ||||||||||||||     
T  30633224 ccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtc 30633125  T
Q  126 tgtgaactcaaagcaagagcaattgttg 153  Q
    | |||| |||||| ||| ||||||||||    
T  30633124 tttgaattcaaagaaagtgcaattgttg 30633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 30660953 - 30660826
Alignment:
Q  26 ccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtg 125  Q
    |||||||||||||||||||||||| |||||||||||||    || || ||||| ||||||||| |||||||||||||||||||| ||||||||||||||     
T  30660953 ccattcacagaaatgtagagactcattccatgatggcaaataatctgatacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtc 30660854  T
Q  126 tgtgaactcaaagcaagagcaattgttg 153  Q
    | |||| |||||| ||| ||||||||||    
T  30660853 tttgaattcaaagaaagtgcaattgttg 30660826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 30669633 - 30669505
Alignment:
Q  26 ccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtg 125  Q
    |||||||||||||||||||||||| |||||||||||||    || |||||||| ||||||||| |||||||||||||||||||| || |||||||||||     
T  30669633 ccattcacagaaatgtagagactcattccatgatggcaaataatatggtacaccatttgtaagcttttccttcaaagcaagcaaagccagcttatcagtc 30669534  T
Q  126 tgtgaactcaaagcaagagcaattgttgc 154  Q
    | |||| |||||| ||| || ||||||||    
T  30669533 tttgaattcaaagaaagtgcgattgttgc 30669505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 16090014 - 16089927
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatat 16089927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 584 - 673
Target Start/End: Original strand, 37498858 - 37498948
Alignment:
Q  584 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||| |||||||| ||||| |||||||  || |||||||| | ||||||||||||||||||||||||||||||||||||    
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatat 37498948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 33732761 - 33732675
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | ||| | |||||||||||||||||||||||||||||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatat 33732675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 44958307 - 44958219
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||| | |||||||||||||  || |||| | | ||||||||||||||||||||||||||||||||||||||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatat 44958219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 591 - 670
Target Start/End: Original strand, 3830900 - 3830979
Alignment:
Q  591 aaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||| |||||||||||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatca 3830979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 6376236 - 6376320
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    |||||||||||||| |||||| | ||||| |||||||     ||||||||||||||||||| |||||||||||||||| ||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatca 6376320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 585 - 670
Target Start/End: Complemental strand, 36315756 - 36315670
Alignment:
Q  585 ataggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||||||||| |||||| |||||||| |||||||  || |||||| ||||||||| |||||||||||| | |||| ||||||    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatca 36315670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 637 - 673
Target Start/End: Complemental strand, 14573137 - 14573101
Alignment:
Q  637 catgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||||||||||||||||||||||||    
T  14573137 catgtgttaggggtattttagtaattttacatcatat 14573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 30631119 - 30631057
Alignment:
Q  26 ccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaag 88  Q
    |||||||||||||||||||||||| |||||||||||||    || |||||||| |||||||||    
T  30631119 ccattcacagaaatgtagagactcattccatgatggcaaataatctggtacaccatttgtaag 30631057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 30633076 - 30633012
Alignment:
Q  159 aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaatat 223  Q
    |||| |||||| |||||||| ||||||||   ||||||||   ||||||||||||||||||||||    
T  30633076 aacagttggctggcaaagcagagaagaaacatcataaaaaaattcattttgctattggagaatat 30633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 30660805 - 30660741
Alignment:
Q  159 aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaatat 223  Q
    |||| |||||| |||||||| ||||||||   ||||||||   ||||||||||||||||||||||    
T  30660805 aacagttggctggcaaagcagagaagaaacatcataaaaaaattcattttgctattggagaatat 30660741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 21390955 - 21391040
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatat 21391040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 44275898 - 44275812
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||||||||| |||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatat 44275812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 673
Target Start/End: Complemental strand, 35545102 - 35545018
Alignment:
Q  590 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggta-ttttagtaattttacatcatat 673  Q
    |||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||| ||||||||||||||||||||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatat 35545018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 7217958 - 7217871
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| || ||||| |||||||||||||  || |||||| | ||||||||||  ||||||||||||||||||||||||||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatat 7217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 6112825 - 6112736
Alignment:
Q  584 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||| |||||||  ||||||||||||   || ||||||   ||||| |||||||||||| ||||||||||||||||||    
T  6112825 aataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatat 6112736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 49244006 - 49243921
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||  |||||| | |||||||||||||  || ||||||   ||||| |||||||||||||||||||||||||||||||    
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatat 49243921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 3672466 - 3672380
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||| ||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat 3672380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 28093094 - 28093181
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||| | ||||||||||||   || ||||||  | ||||| |||||||||||| |||| |||||||||||||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatat 28093181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 663
Target Start/End: Original strand, 52191200 - 52191275
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 663  Q
    |||||||||| || ||||||| ||||| |||||||  | ||||||| | ||| ||||||| |||||||||||||||    
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaattt 52191275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 35364793 - 35364670
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcag 123  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||  |  |||| ||||||||| ||||| |||||||||||||| || || |||||||    
T  35364793 tgccattcacagaaatgtagagactcattccatgatggcagagaatcagacacaccatttgtaagcttttctttcaaagcaagcaaagcaagtttatcag 35364694  T
Q  124 tgtgtgaactcaaagcaagagcaa 147  Q
    | |||||||||||||||| |||||    
T  35364693 tctgtgaactcaaagcaaaagcaa 35364670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 35752743 - 35752630
Alignment:
Q  31 cacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtga 130  Q
    ||||||||||||||||||| |||||||||||||  | || |||||||| ||||||||| |||||||| ||||||||||| || ||||||||||| || ||    
T  35752743 cacagaaatgtagagactcattccatgatggcaaagaatctggtacaccatttgtaagcttttcctttaaagcaagcaaagcaagcttatcagtctgcga 35752644  T
Q  131 actcaaagcaagag 144  Q
    |||||||| |||||    
T  35752643 actcaaagaaagag 35752630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 35404514 - 35404400
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcag 123  Q
    ||||||||||| |||||||||||||  |||||||||||||  | || |||||||| ||||||||| ||||||||||| |||||||| || ||||||||||    
T  35404514 tgccattcacaaaaatgtagagacttattccatgatggcaaagaatctggtacaccatttgtaagcttttccttcaatgcaagcaaagccagcttatcag 35404415  T
Q  124 tgtgtgaactcaaag 138  Q
    | | |||||||||||    
T  35404414 tctttgaactcaaag 35404400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 31800750 - 31800664
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatat 31800664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 670
Target Start/End: Original strand, 27553372 - 27553455
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||| ||||||||||||| |||||||||||||  || |||||| |  |||||||||| ||||||||||||||||||||||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatca 27553455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 35374339 - 35374256
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagc 107  Q
    ||||||||||||||||||| |||||| ||||||||||| || |  | |||||||| |||||| || ||||||||||||||||||    
T  35374339 tgccattcacagaaatgtaaagactcattccatgatggaagagagtctggtacaccatttgtgagcttttccttcaaagcaagc 35374256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 42683792 - 42683705
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||||||| | |||||||||||||  || |||||| | | || | |||||||||||||||||||||||||||||||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatat 42683705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 1815619 - 1815701
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||||||||||||| |  | |   ||||| |  ||||||||||||||||||||||||||||||||||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaaat---gtacaccctatgtgttaggggtattttagtaattttacatcatat 1815701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 40887940 - 40888027
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||| |||||||||||||  || ||||||  | ||| | |||| ||||||||||||||||||||||||||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatat 40888027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 13347320 - 13347234
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat 13347234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 39371119 - 39371033
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||||||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatat 39371033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 35421608 - 35421516
Alignment:
Q  17 aacaccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaa 109  Q
    |||||||| ||||||||||||||| ||||| || ||||||||||| || | ||  |||| || ||| ||||||||||| ||||||| ||||||    
T  35421608 aacaccctcccattcacagaaatgaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaa 35421516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 35404364 - 35404239
Alignment:
Q  159 aacatttggctagcaaagcaaagaagaaa-agacataaaaattctcattttgctattggagaatatg---taatatgggtaaccaaataaca-cttctag 253  Q
    |||||||||||||||||||| |||||||  | | | ||||| | |||||||||||||||||||||||   || |||||||||| ||| || | |||||||    
T  35404364 aacatttggctagcaaagcagagaagaatcataaaaaaaaaat-tcattttgctattggagaatatgtattattatgggtaactaaagaataccttctag 35404266  T
Q  254 tgc--atatgcagctttgagatatgat 278  Q
    |||  ||||||||||||||||| ||||    
T  35404265 tgcatatatgcagctttgagatttgat 35404239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 35434953 - 35434861
Alignment:
Q  17 aacaccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaa 109  Q
    |||||||| ||||||||||||||  ||||| || ||||||||||| || | ||  |||| || ||| ||||||||||| ||||||| ||||||    
T  35434953 aacaccctcccattcacagaaataaagagattcattccatgatggaagagcatcaggtataccattggtaagtttttctttcaaagaaagcaa 35434861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 670
Target Start/End: Original strand, 4300544 - 4300625
Alignment:
Q  589 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||| |||||||| | ||||| ||||| |  |  |||||| |||||||||||||| ||||||| |||||| ||||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatca 4300625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 35364634 - 35364567
Alignment:
Q  162 atttggctagcaaagcaaagaagaaa---agacataaaaattctcattttgctattggagaatatgta 226  Q
    |||||||||||||||||||||| |||    ||||||||| | |||||||| |||||| ||||||||||    
T  35364634 atttggctagcaaagcaaagaaaaaatatcgacataaaagtcctcatttttctattgaagaatatgta 35364567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 586 - 665
Target Start/End: Original strand, 87160 - 87239
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaatttta 665  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||||    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaatttta 87239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 18184745 - 18184659
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatat 18184659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 13563300 - 13563200
Alignment:
Q  21 ccctgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttat 120  Q
    ||||||||||||||||||||||||||||| ||||||||||| || | ||  || || | ||||||||| ||||||| |||||||||||| ||||||||||    
T  13563300 ccctgccattcacagaaatgtagagactcattccatgatggtagagaatcgggcacgccatttgtaagcttttcctacaaagcaagcaaagctagcttat 13563201  T
Q  121 c 121  Q
    |    
T  13563200 c 13563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 30432532 - 30432445
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||||| |||||||||||||  || |||||||| ||| | ||| |||||||||||||||||||||||||||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatat 30432445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 36189408 - 36189322
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||| | ||| |||||||||||||||| |||||||| |||||||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtaca-cccatatgttaggggtattttaataattttatatcatat 36189322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 12665539 - 12665451
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||| | |||||| ||||||  || |||| | | ||||||||||||||||||||||||||||||||||||||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatat 12665451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 10203856 - 10203770
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| ||||||||||| |  || |||||| | |||||| |||||| |||||||||||||||| |||||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatat 10203770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 670
Target Start/End: Complemental strand, 33726203 - 33726121
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    |||||||||||| |||||||| ||||| |||||||     ||||||  |||||||||||||||||||||||||||| ||||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatca 33726121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 42162790 - 42162704
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||  ||||||||||||  ||| |||||| | | |||| |||||||||||| ||||||||||||||||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatat 42162704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 663
Target Start/End: Original strand, 38845023 - 38845098
Alignment:
Q  589 gaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattt 663  Q
    |||||||||||||| ||||| ||||| ||||||| ||  ||||||  || ||||||||||| ||||||||||||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaattt 38845098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 586 - 673
Target Start/End: Complemental strand, 43186220 - 43186133
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||| | ||||||||||||   || |||||| |  |||| ||||||| |||| |||||||||| |||||||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatat 43186133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 29473004 - 29472915
Alignment:
Q  584 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | |||||||||||||||||||||||||||||||||||||    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatat 29472915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 586 - 673
Target Start/End: Original strand, 51339781 - 51339868
Alignment:
Q  586 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||| |||||||| |||||||||||||  || ||||||  ||||||||||| ||||||||||||||||||||||||||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatat 51339868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 21559753 - 21559667
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||||||||||| |||||||||||||  || |||||| | | ||||||||||||||||||||||||||||||||||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatat 21559667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 46111943 - 46112029
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||| | |||| |||||||||||||||||||||||||||||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatat 46112029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 1153147 - 1153036
Alignment:
Q  24 tgccattcacagaaatgtagagactcgttccatgatggcagcggatttggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcag 123  Q
    ||||||| ||| |||||||||||||| |||||||| ||||| | ||  || || | |||||||||||||| ||||||||||||||| |||||||| || |    
T  1153147 tgccatttacaaaaatgtagagactcattccatgacggcagagaatcaggcacgccatttgtaagttttttcttcaaagcaagcaaagctagcttgtccg 1153048  T
Q  124 tgtgtgaactca 135  Q
    ||| ||||||||    
T  1153047 tgtctgaactca 1153036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 30735494 - 30735581
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggta-ttttagtaattttacatcatat 673  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||| |||||||||||| |||||||||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatat 30735581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 44000185 - 44000095
Alignment:
Q  584 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||| |||||||  ||||||||||||  ||| |||||  | |||||| |||| ||||||| ||||||||||||||||||    
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatat 44000095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 590 - 673
Target Start/End: Complemental strand, 36749596 - 36749512
Alignment:
Q  590 aaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||| |||||||  ||||||||||||  ||| |||||| | |||||| |||| ||||||| ||||||||||||||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatat 36749512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 48200878 - 48200791
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||||| | ||||||||||||  ||| |||||| | | |||| ||| |||||||| ||||||||||||||||||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatat 48200791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 588 - 673
Target Start/End: Original strand, 36370337 - 36370423
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||| ||  ||||||||||||  ||| | |||| | |||||| |||||||||||| ||||||||||||||||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatat 36370423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 589 - 673
Target Start/End: Complemental strand, 22894870 - 22894786
Alignment:
Q  589 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||||||||| |||| |||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatat 22894786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 663
Target Start/End: Original strand, 39467096 - 39467176
Alignment:
Q  583 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 663  Q
    ||||||||||||||||| || ||||| ||||| |||||||     |||||| ||||||||||| || ||||||||||||||    
T  39467096 aaataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaattt 39467176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 587 - 673
Target Start/End: Original strand, 34749896 - 34749983
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||||  ||||| | ||||||||||||   || |||||| | | |||| |||||||||||| ||||||||||||||||||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatat 34749983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 587 - 671
Target Start/End: Original strand, 3118045 - 3118130
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcat 671  Q
    ||||||||||||| |||||| | ||||||||||| |  || |||||| || ||||| |||||||||||||||||||||||||||||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcat 3118130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 589 - 670
Target Start/End: Complemental strand, 14023124 - 14023043
Alignment:
Q  589 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| ||||||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatca 14023043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 587 - 670
Target Start/End: Complemental strand, 24208636 - 24208553
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatca 670  Q
    ||||||||||||| |||||| | ||||| |||||||  |  | |||| ||||||||||||||||||||||||||||| ||||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatca 24208553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 587 - 673
Target Start/End: Complemental strand, 13697760 - 13697674
Alignment:
Q  587 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    ||||||||||||| |||| | | |||||||||||  | || |||||| | |||||||||| | |||||||||||||||| |||||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatat 13697674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 673
Target Start/End: Original strand, 15345656 - 15345744
Alignment:
Q  585 ataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||| |||| |||||| ||||||||||||||   || |||||| |  |||| ||||||| |||| |||||||| | |||||||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatat 15345744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 588 - 673
Target Start/End: Complemental strand, 6910 - 6824
Alignment:
Q  588 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatat 673  Q
    |||||||||||| |||| ||||||||||||||||   || |||||| | |||||| |||||| ||||| ||||||||||||||||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatat 6824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University