View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17858_low_4 (Length: 486)
Name: NF17858_low_4
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 236 - 469
Target Start/End: Original strand, 44877999 - 44878232
Alignment:
| Q |
236 |
catcagagctttcaggatctctaaacggggaaccaaacatatctgacttttaaacatatctgactgactaagctcagttttgaaatcagcagtcttctca |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44877999 |
catcagagctttcaggatctctaaacggggaaccaaacatatctgacttttaaacatatctgactgactaagctcagttttgaaatcagcagtcttctca |
44878098 |
T |
|
| Q |
336 |
tatagttatgacatttttccatgcaaatattcacactatactttttccatgtttagaaaaataaaacgtagggctgactgccctctttattccatgtttc |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44878099 |
tatagttatgacatttttccatgcaaatattcacactatactttttccatgtttagaaaaataaaacgtagggctgactgccctctttattccatgtttc |
44878198 |
T |
|
| Q |
436 |
ttttgaagatccacactatacttgtgaggcacat |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44878199 |
ttttgaagatccacactatacttgtgaggcacat |
44878232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 57 - 243
Target Start/End: Original strand, 44877790 - 44877976
Alignment:
| Q |
57 |
ttattttctttgtcccaaaatataagnnnnnnnncaaacttttatcctatttaatcttgttcattcgcacttggaagtacatggatagatatgtttagaa |
156 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44877790 |
ttattttctttgtcccaaaatataagaaaaaaattaaacttttatcctatttaatcttgttcattcgcacttggaagtacatggatagatatgtttagaa |
44877889 |
T |
|
| Q |
157 |
ggatattcataactatacatcatcagaaaaatcatcaaatgttctcacatcaccgtctgtattcatttgcaaactactccatcagag |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44877890 |
ggatattcataactatacatcatcagaaaaatcatcaaatgttctcacatcaccgtctgtattcatttgcaaactactccaacagag |
44877976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 28921145 - 28921105
Alignment:
| Q |
287 |
aaacatatctgactgactaagctcagttttgaaatcagcag |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28921145 |
aaacatatctgactgactaagctcagttttgaaatcagcag |
28921105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 28907976 - 28907936
Alignment:
| Q |
287 |
aaacatatctgactgactaagctcagttttgaaatcagcag |
327 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28907976 |
aaacatatctgacttgctaagctcagttttgaaatcagcag |
28907936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 28921704 - 28921670
Alignment:
| Q |
174 |
catcatcagaaaaatcatcaaatgttctcacatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
28921704 |
catcatcagaaaaatcatcaaatgttctcatatca |
28921670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 42896673 - 42896633
Alignment:
| Q |
287 |
aaacatatctgactgactaagctcagttttgaaatcagcag |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42896673 |
aaacatatctgactgactaagctcagttttgaaatcagcag |
42896633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 42891827 - 42891788
Alignment:
| Q |
288 |
aacatatctgactgactaagctcagttttgaaatcagcag |
327 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42891827 |
aacatatctgacttactaagctcagttttgaaatcagcag |
42891788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 42892387 - 42892353
Alignment:
| Q |
174 |
catcatcagaaaaatcatcaaatgttctcacatca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
42892387 |
catcatcagaaaaatcatcaaatgttctcatatca |
42892353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 42891666 - 42891598
Alignment:
| Q |
398 |
aaaacgtagggctgactgccctctttattccatgtttcttttgaagatccacactatacttgtgaggcac |
467 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||| ||| |||||||||| ||||||||||| |||| |
|
|
| T |
42891666 |
aaaacgtagggctgattgccctcctc-ttccatgtttttttggaagatccacggtatacttgtgaagcac |
42891598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University