View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17858_low_9 (Length: 368)
Name: NF17858_low_9
Description: NF17858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17858_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 11023265 - 11022925
Alignment:
| Q |
16 |
cagttataaacatgagattcataaacatgaaacaaatcctcaccttccaaaaccagggcattaccccaaagaacaaaattgcagaatccctcactattgt |
115 |
Q |
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| T |
11023265 |
cagttataaacatgagattcataaacatgaaacaaatcctcaccttccaaaaccagggcattaccccaaagaacaaaattgcagaatccctcactattgt |
11023166 |
T |
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| Q |
116 |
cacaaattggcaaacaaaatggaagcgactgaaatagtgaacagccatgtataagagttactagcaagacataccggaataaaacttcataattacacat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11023165 |
cacaaattggcaaacaaaatggaagcgactgaaatagtgaacagccatgtataagagttactagcaagacatactggaataaaacttcataattacacat |
11023066 |
T |
|
| Q |
216 |
caacatctaataggataagaaatctacataaaacaaaataaaaacctgtgaacaaggctataggatctagttttctgaaatgtatcttcgctgattactc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11023065 |
caacatctaataggataagaaatctacataaaacaaaataaaaacctgtgatcaaggctataggatctagttttctgaaatgtatcttcgctgattactc |
11022966 |
T |
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| Q |
316 |
cttctaaagtctttggaagagtagtaagtttgtttgcccta |
356 |
Q |
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| T |
11022965 |
cttctaaagtctttggaagagtagtaagtttgtttgcccta |
11022925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 29813554 - 29813633
Alignment:
| Q |
268 |
caaggctataggatctagttttctgaaatgtatcttcgctgattactccttctaaagtctttggaagagtagtaagtttg |
347 |
Q |
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|||| ||||||| ||||| ||||| |||| | |||| |||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
29813554 |
caagactataggctctagatttctcaaatttctcttggctgattactccttctaaagactttggaagagtaggaagtttg |
29813633 |
T |
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