View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17859_high_1 (Length: 748)

Name: NF17859_high_1
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17859_high_1
NF17859_high_1
[»] chr4 (1 HSPs)
chr4 (1-732)||(38322896-38323627)


Alignment Details
Target: chr4 (Bit Score: 704; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 704; E-Value: 0
Query Start/End: Original strand, 1 - 732
Target Start/End: Original strand, 38322896 - 38323627
Alignment:
Q  1 tccatgaaaacatatccttctcatccataacctcaaatacattcaaagcatcactagcacatttgcatttcccatacatatcaatcagtgcattcaaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322896 tccatgaaaacatatccttctcatccataacctcaaatacattcaaagcatcactagcacatttgcatttcccatacatatcaatcagtgcattcaaaac 38322995  T
Q  101 aacaacactggaatgataacccattttcgtcaaaaacccatgaacagcctgtccgttgtcataatctcctatcacagaatatatcgacaaaacaccggta 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  38322996 aacaacactggaatgataacccattttcgtcaaaaatccatgaacagcctgtccgttgtcaaagtctcctatcacagaatatatcgacaaaacaccggta 38323095  T
Q  201 accgtatatctacaaggaaccaccccattttccaccatcctcctgaacatccccaaagcctcctcaaagcacccaatctgcgcatatccattaaccatcg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38323096 accgtatatctacaaggaaccaccccattttccaccatcctcctgaacatccccaaagcctcctcaaagcacccaatctgtgcatatccattaaccatcg 38323195  T
Q  301 aattccacagcacaacatctctaacaggcaattcctcaaacacctcatgtgcatccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttcc 400  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38323196 aattccaaagcacaacatctctaacaggcaattcctcaaacacctcatgtgcatccacaaccaaccaaaatttcaaataagtagtaaccaaagcacttcc 38323295  T
Q  401 aacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatcttcttaacctcaaaaacatctccagcatcaccacaagctctgatcacacac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38323296 aacaaaaacatccaattccaacccaaatttaaacaacaatccatgaatcttcttaacctcaaaaacatctccagcatcaccacaagctctgatcacacac 38323395  T
Q  501 gggaacgtgaatttatcaggaataacaacacccagaaggcgcatttgcttgtaaagacgaaacgagtgttgagagagtccgtttgcaacgaatccagcaa 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  38323396 gggaacgtgaatttatcaggaataacaacacccagaaggcgcatttgcttgtaaagaccaaacgagtgttgagagagtccgtttgaaacgaatccagcaa 38323495  T
Q  601 tgattgcattgtaagcgaatacatttttgtcatgatgggttgggtagttgaaaactttgagagcatagttgatgagggtgcatttggagtacatattgat 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38323496 tgattgcattgtaagcgaatacatttttgtcatgatgggttgggtagttgaaaactttgagagcatagttgatgagggtgcatttggagtacatattgat 38323595  T
Q  701 gatgctggtgatggcgagtggggatgcaaaga 732  Q
    ||||||||||||||||||||||||||||||||    
T  38323596 gatgctggtgatggcgagtggggatgcaaaga 38323627  T

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