View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17859_high_5 (Length: 371)
Name: NF17859_high_5
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17859_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 49936182 - 49935839
Alignment:
| Q |
10 |
attatactgaatgtctgttgatgtgctattgttcagatcactattgaaaaaattatctttgaacaaagcaacagtcattatgaacttcaaggtgaatatg |
109 |
Q |
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| T |
49936182 |
attatactgaatgtctgttgatgtgctattgttcagatcactattgaaaaaattatctttgaacaaagcaacagtcattatgaacttcaaggtgaatatg |
49936083 |
T |
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| Q |
110 |
tattgcctggagccagcgatcgcaaccttaatgatggaaaagaggaaggcattttgaaatggctaatgtctgggcatcttagtagtgttatatcctcgat |
209 |
Q |
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| T |
49936082 |
tattgcctggatccagcgatcgcaaccttaatgatggaaaagaggaaggcattttgaaaaggctaatgtctgggcatcttagtagtgttatatcctcgat |
49935983 |
T |
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| Q |
210 |
gggcaggtggagaatgaaacttgaagtatgtcgagcggagattgctgagatgcttcctcttgcaaggcttctttctcgaagcacggatccgagtgttcta |
309 |
Q |
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| T |
49935982 |
gggcaggtggagaatgaaacttgaagtatgtcgagcggagattgccgagatgcttcctcttgcaaggcttctttctcgaagcacggatccgagtgttcta |
49935883 |
T |
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| Q |
310 |
tcaagatcaaaggtggtattatactctatatcttcggtggtttc |
353 |
Q |
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| T |
49935882 |
tcaagatcaaaggtggtattatactctatatcttcggtggtttc |
49935839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 299
Target Start/End: Original strand, 1912385 - 1912647
Alignment:
| Q |
37 |
attgttcagatcactattgaaaaaattatctttgaacaaagcaacagtcattatgaacttcaaggtgaatatgtattgcctggagccagcgatcgcaacc |
136 |
Q |
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| T |
1912385 |
attgttcagatcactattgaaaaaactgttttgcaacaaaaccacagctattatgaacttcaaggtgaatacgttttgcctggtactcgagatcgtaatc |
1912484 |
T |
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| Q |
137 |
ttaatgatggaaaagaggaaggcattttgaaatggctaatgtctgggcatc---ttagtagtgttatatcctcgatgggcaggtggagaatgaaacttga |
233 |
Q |
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|| ||| ||| |||| ||| |||| ||| ||||||||| || |||| || |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1912485 |
ctattgacggag--gaggt-ggcctttttaaaaagctaatgtcgggtcatcgcgttggtagtgttatatcctcaatgggcaggtggagaatgaaacttga |
1912581 |
T |
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| Q |
234 |
agtatgtcgagcggagattgctgagatgcttcctcttgcaaggcttctttctcgaagcacggatcc |
299 |
Q |
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| T |
1912582 |
agttcccagagcagaggttgctgagatgcttcctcttgcgaggcttctttctcggagcatggatcc |
1912647 |
T |
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