View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17859_high_6 (Length: 286)
Name: NF17859_high_6
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17859_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 7710394 - 7710494
Alignment:
| Q |
10 |
aagaatatgaaaagtgcaattcccaactcaactatgataagtggcaccaagaacacacaatactgaaatatctgaattaaggaaaatgaacaaagatgaa |
109 |
Q |
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| T |
7710394 |
aagaatatgaaaagtgcaattcccaactcaactatgataagtggtaccaagaacacacaatactgaaatatctgaattaaggaaaatgaacaaagatgaa |
7710493 |
T |
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| Q |
110 |
g |
110 |
Q |
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| T |
7710494 |
g |
7710494 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 7710581 - 7710624
Alignment:
| Q |
198 |
gcacctataattcaatagtggttatcaattattttcacttcata |
241 |
Q |
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| T |
7710581 |
gcacctataattcaatagtggttatcaattattttcacttcata |
7710624 |
T |
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