View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17859_low_3 (Length: 439)
Name: NF17859_low_3
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17859_low_3 |
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| [»] scaffold0324 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 20911506 - 20911092
Alignment:
| Q |
10 |
atcaacaaaactcagaaatggccatcaatacctgttctgaactcaccatttaccctgaattcaaaccataccacctcaatgcaacacactctaacatttc |
109 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
20911506 |
atcaaccaaactcggaaatggccatcaatacctgttctgaactcatcatttaccctgaattcaaaccatgccacctcaatgcaacacactctataatttt |
20911407 |
T |
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| Q |
110 |
ctttcgcattgctttgagaaacatagccaacaaaagatcatttattattgaacaatctgattatgataataatccttctttatcagaagaacaaactttt |
209 |
Q |
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| T |
20911406 |
ctttcgcattgcattgagaaacatagccaataaaagatcatttattattgaacaatctgattctgataataatccttctttatcagaagaacaaactttt |
20911307 |
T |
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| Q |
210 |
gttgtgcaacccgtaagtgtagccttaccttcagaagctactcttactactccacctacacatgaaaactctactggacctgagtttatgatcacatcaa |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20911306 |
gttgtgcaacccataagtgtagccttaccttcagaagctactcttactcctccacctacacatgaaaactctactggacctgagtttatgatcacatcga |
20911207 |
T |
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| Q |
310 |
accacattgttgttactgaaaccatatccatagataaacccagctcttcaaaccaaatcataattacaaatgtctcac-ccccacctacctttttactag |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20911206 |
accaaattgttgttactgaaaccatatccatagataaacccagctcttcaaaccaaatcataattacaaatgtctcaccccccacctacctttttactag |
20911107 |
T |
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| Q |
409 |
tctctattatattaa |
423 |
Q |
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| T |
20911106 |
tctctgttatattaa |
20911092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0324 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0324
Description:
Target: scaffold0324; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 1497 - 1266
Alignment:
| Q |
75 |
ccataccacctcaatgcaacacactctaacatttcctttcgcattgctttgagaaacatagccaacaaaagatcatttattattgaacaatctgattatg |
174 |
Q |
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|||||||| ||||||||||| |||||||||||||| ||| ||||||| |||||||| |||||||||||||| |||| | || | ||||||| || ||||| |
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| T |
1497 |
ccataccatctcaatgcaactcactctaacatttcttttggcattgcattgagaaatatagccaacaaaaggtcatcttttctagaacaatttgtttatg |
1398 |
T |
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| Q |
175 |
ataataatccttctttatcagaagaacaaacttttgttgtgcaacccgtaagtgtagccttaccttcagaagctactcttactactccacctacacatga |
274 |
Q |
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| T |
1397 |
ataataactcctctttatcagaagaacaaatctttgttgctcaacctttaagtgtagctttaccttcagaagctactcttgatagtcaacccaaacatga |
1298 |
T |
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| Q |
275 |
aaactctactggacctgagtttatgatcacat |
306 |
Q |
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| T |
1297 |
aaactctactaaacctgattttatgatcacat |
1266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 18784727 - 18784653
Alignment:
| Q |
180 |
aatccttctttatcagaagaacaaacttttgttgtgcaacccgtaagtgtagccttaccttcagaagctactctt |
254 |
Q |
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| T |
18784727 |
aatccttgcttatcagaagaatcaactcttgttgtgcaacctttgagtgtagctttaccttcacaagccactctt |
18784653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 24273175 - 24273133
Alignment:
| Q |
324 |
actgaaaccatatccatagataaacccagctcttcaaaccaaa |
366 |
Q |
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| T |
24273175 |
actgaaaccatatccacagatataccctgctcttcaaaccaaa |
24273133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 24273113 - 24273064
Alignment:
| Q |
374 |
tacaaatgtctcacccccacctacctttttactagtctctattatattaa |
423 |
Q |
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| T |
24273113 |
tacaaatgtctcatccctacctacccttttactagactctactatattaa |
24273064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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