View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17859_low_4 (Length: 394)
Name: NF17859_low_4
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17859_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 38175956 - 38175575
Alignment:
| Q |
1 |
ttatctctatatatctctcacataatcagtatgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38175956 |
ttatctctatatctctctcacataatcagtatgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctc |
38175857 |
T |
|
| Q |
101 |
tcacaaactcatccttcccaatccgaatccctctctcaatttacagctcacaaattgatcgacgatttcttcacttggaagttaaggttttgtctctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38175856 |
tcacaaactcatccttcccaatccgaatccctctctcaatttacagctcacaaattgatcgacgatttcttcactttgaagttaaggttttgtctctttg |
38175757 |
T |
|
| Q |
201 |
aagtgataactggggtaaatttatttcttctcttaattttgacattttttgttgatttctgatgcggtataatcttgtcaaattttcttgtttaattgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38175756 |
aagtgataactggggtaaatttatttcttctcttaattttaacattttttgttgatttctgatacggtataatcttgtcaaattttcttgtttaattgat |
38175657 |
T |
|
| Q |
301 |
actttttgttactgttgttgaga-tttagtctcattttcttgattaagtttcaagattctagtttttatgaggcatattctt |
381 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38175656 |
actttttgttactgttgttgagattttagtctcattttcttgattaagtttcaagattctagtttttatgaggcattttctt |
38175575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 38203180 - 38202799
Alignment:
| Q |
1 |
ttatctctatatatctctcacataatcagtatgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38203180 |
ttatctctatatctctctcacataatcagtatgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctc |
38203081 |
T |
|
| Q |
101 |
tcacaaactcatccttcccaatccgaatccctctctcaatttacagctcacaaattgatcgacgatttcttcacttggaagttaaggttttgtctctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38203080 |
tcacaaactcatccttcccaatccgaatccctctctcaatttacagctcacaaattgatcgacgatttcttcactttgaagttaaggttttgtctctttg |
38202981 |
T |
|
| Q |
201 |
aagtgataactggggtaaatttatttcttctcttaattttgacattttttgttgatttctgatgcggtataatcttgtcaaattttcttgtttaattgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38202980 |
aagtgataactggggtaaatttatttcttctcttaattttaacattttttgttgatttctgatacggtataatcttgtcaaattttcttgtttaattgat |
38202881 |
T |
|
| Q |
301 |
actttttgttactgttgttgaga-tttagtctcattttcttgattaagtttcaagattctagtttttatgaggcatattctt |
381 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38202880 |
actttttgttactgttgttgagattttagtctcattttcttgattaagtttcaagattctagtttttatgaggcattttctt |
38202799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 38164125 - 38164265
Alignment:
| Q |
245 |
ttttttgttgatttctgatgcggtataatcttgtcaaattttcttgtttaattgatacttt--------ttgttactgttgttg-aga-tttagtctcat |
334 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||| ||||||||||| |
|
|
| T |
38164125 |
ttttttcttgatttctgatacggtataatcttgtcaaattttcttgtttaattgatatttttgttactgttgttactgttgatgaagattttagtctcat |
38164224 |
T |
|
| Q |
335 |
tttcttgattaagtttcaagattctagtttttatgaggcat |
375 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38164225 |
tttcttgattaagtttcaagattctagcttttatgaggcat |
38164265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 38163975 - 38164073
Alignment:
| Q |
147 |
ctcacaaattgatcgacgatttcttcacttggaagttaaggttttgtctctttgaagtgataactggggtaaatttatttcttctcttaattttgacatt |
246 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
38163975 |
ctcacaaattgatcgaggatttcttcacgtggaagttagggttttgtctcttggaagtgataacttgggtaa----atttcttctcttaattttaacatt |
38164070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 38163883 - 38163982
Alignment:
| Q |
8 |
tatatatctctcacataatcagtatgtttctctcacttttataattgaacgtttccctcgcttttggatttctgttcgttatttccctttctctcacaaa |
107 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
38163883 |
tatatctctctcacaaaatcaatttgtttctctcacttttataattgaacgtttccctcgcttttggttttctcatcaaagtttccctttctctcacaaa |
38163982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 11587513 - 11587556
Alignment:
| Q |
268 |
tataatcttgtcaaattttcttgtttaattgatactttttgtta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11587513 |
tataatcttgtcaaattttcttgtttaattgatattttttgtta |
11587556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 11587384 - 11587433
Alignment:
| Q |
200 |
gaagtgataactggggtaaatttatttcttctcttaattttgacattttt |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
11587384 |
gaagtgataactggggtaaataaatttcttctcttaattttaacattttt |
11587433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 38174213 - 38174157
Alignment:
| Q |
307 |
tgttactgttgttga-gattt-agtctcattttcttgattaagtttcaagattctag |
361 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38174213 |
tgttactgttgttgaagattttagtctcgttttcttgattaagtttcaagattctag |
38174157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 361
Target Start/End: Complemental strand, 38201437 - 38201381
Alignment:
| Q |
307 |
tgttactgttgttga-gattt-agtctcattttcttgattaagtttcaagattctag |
361 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
38201437 |
tgttactgttgttgaagattttagtctcgttttcttgattaagtttcaagattctag |
38201381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 38165528 - 38165585
Alignment:
| Q |
303 |
tttttgttactgttgttgagatttagtctcattttcttgattaagtttcaagattctag |
361 |
Q |
| |
|
||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
38165528 |
tttttgttactgttgaagat-tttagcctcgttttcttgattaagtttcaagattctag |
38165585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 11589446 - 11589502
Alignment:
| Q |
307 |
tgttactgttgttga-gattt-agtctcattttcttgattaagtttcaagattctag |
361 |
Q |
| |
|
||||||||||||||| ||||| ||| || ||||||| |||||||||||||||||||| |
|
|
| T |
11589446 |
tgttactgttgttgaagattttagtatcgttttcttcattaagtttcaagattctag |
11589502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University