View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17859_low_7 (Length: 266)

Name: NF17859_low_7
Description: NF17859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17859_low_7
NF17859_low_7
[»] chr4 (23 HSPs)
chr4 (1-249)||(44145844-44146092)
chr4 (128-249)||(43961523-43961644)
chr4 (1-74)||(44155979-44156052)
chr4 (126-241)||(55080700-55080815)
chr4 (131-249)||(22186832-22186950)
chr4 (153-238)||(37761588-37761673)
chr4 (173-249)||(4437480-4437556)
chr4 (173-241)||(5825017-5825085)
chr4 (153-249)||(54576362-54576458)
chr4 (125-249)||(17182490-17182616)
chr4 (74-134)||(44156147-44156207)
chr4 (191-241)||(51075218-51075268)
chr4 (153-249)||(7977530-7977627)
chr4 (174-249)||(54001162-54001234)
chr4 (157-249)||(21694929-21695020)
chr4 (173-249)||(29993826-29993902)
chr4 (153-249)||(47846090-47846186)
chr4 (128-188)||(56135905-56135965)
chr4 (125-241)||(11089637-11089756)
chr4 (187-249)||(9030329-9030391)
chr4 (144-222)||(35543333-35543411)
chr4 (134-210)||(11842325-11842401)
chr4 (193-249)||(55510283-55510338)
[»] chr8 (15 HSPs)
chr8 (125-249)||(39449417-39449546)
chr8 (153-249)||(12022178-12022274)
chr8 (128-249)||(20472702-20472823)
chr8 (149-247)||(9933356-9933454)
chr8 (153-238)||(30365254-30365339)
chr8 (153-249)||(43732800-43732896)
chr8 (175-249)||(16024267-16024341)
chr8 (188-249)||(29937615-29937676)
chr8 (156-249)||(34196422-34196514)
chr8 (164-249)||(8815187-8815272)
chr8 (188-238)||(40633059-40633109)
chr8 (175-224)||(8671849-8671898)
chr8 (196-249)||(9434377-9434430)
chr8 (190-249)||(6453297-6453356)
chr8 (194-241)||(43826453-43826500)
[»] scaffold0095 (1 HSPs)
scaffold0095 (125-249)||(8260-8390)
[»] chr7 (20 HSPs)
chr7 (153-249)||(33519161-33519257)
chr7 (125-241)||(48013624-48013740)
chr7 (128-249)||(23116269-23116391)
chr7 (144-249)||(39646582-39646687)
chr7 (173-249)||(28074158-28074234)
chr7 (153-249)||(36267588-36267684)
chr7 (148-241)||(21857468-21857560)
chr7 (157-218)||(30592292-30592353)
chr7 (153-238)||(48881593-48881678)
chr7 (173-222)||(3143624-3143673)
chr7 (192-249)||(3215934-3215991)
chr7 (153-249)||(37620887-37620983)
chr7 (190-249)||(16833808-16833867)
chr7 (175-246)||(48015323-48015394)
chr7 (188-249)||(37925954-37926015)
chr7 (182-246)||(8122264-8122328)
chr7 (164-231)||(2087785-2087852)
chr7 (126-181)||(17853051-17853106)
chr7 (158-241)||(35422085-35422168)
chr7 (153-219)||(31364080-31364146)
[»] chr5 (10 HSPs)
chr5 (153-249)||(10204689-10204785)
chr5 (153-249)||(15986659-15986755)
chr5 (153-241)||(33744228-33744316)
chr5 (128-249)||(8551427-8551549)
chr5 (128-241)||(40305670-40305788)
chr5 (153-249)||(34980923-34981019)
chr5 (164-249)||(6382440-6382525)
chr5 (153-249)||(10043365-10043461)
chr5 (173-248)||(6597845-6597920)
chr5 (164-249)||(10043055-10043140)
[»] chr3 (20 HSPs)
chr3 (129-249)||(40858678-40858798)
chr3 (153-249)||(34641105-34641199)
chr3 (144-249)||(42772145-42772250)
chr3 (128-249)||(41414191-41414313)
chr3 (128-247)||(48683727-48683848)
chr3 (157-224)||(18086019-18086086)
chr3 (154-231)||(8432297-8432372)
chr3 (155-249)||(16884010-16884102)
chr3 (173-249)||(10943669-10943745)
chr3 (121-237)||(54985696-54985812)
chr3 (173-238)||(24253846-24253911)
chr3 (188-249)||(55428492-55428553)
chr3 (173-249)||(17474261-17474337)
chr3 (153-249)||(26135910-26136006)
chr3 (124-212)||(37102155-37102243)
chr3 (175-249)||(42699669-42699743)
chr3 (195-249)||(44412474-44412528)
chr3 (195-249)||(46978540-46978594)
chr3 (176-249)||(21090129-21090202)
chr3 (128-212)||(30200098-30200182)
[»] chr1 (9 HSPs)
chr1 (153-249)||(35512910-35513006)
chr1 (153-249)||(1085524-1085621)
chr1 (125-241)||(47071172-47071288)
chr1 (154-249)||(25268377-25268472)
chr1 (130-249)||(33643381-33643499)
chr1 (173-249)||(2506652-2506728)
chr1 (188-248)||(13386989-13387049)
chr1 (195-249)||(51303461-51303515)
chr1 (173-249)||(35927926-35928001)
[»] scaffold0007 (1 HSPs)
scaffold0007 (153-247)||(242331-242425)
[»] chr2 (17 HSPs)
chr2 (175-249)||(35325382-35325456)
chr2 (176-249)||(45098282-45098355)
chr2 (188-249)||(15085770-15085831)
chr2 (149-241)||(36052118-36052210)
chr2 (154-249)||(42813733-42813828)
chr2 (161-239)||(9313110-9313188)
chr2 (188-238)||(34187701-34187751)
chr2 (174-247)||(31061474-31061547)
chr2 (173-249)||(45257420-45257496)
chr2 (188-239)||(8554369-8554420)
chr2 (174-239)||(1052811-1052876)
chr2 (192-249)||(3094427-3094484)
chr2 (164-247)||(42296349-42296432)
chr2 (195-249)||(31928121-31928175)
chr2 (195-249)||(33265719-33265773)
chr2 (155-211)||(14187111-14187167)
chr2 (192-224)||(22356141-22356173)
[»] chr6 (10 HSPs)
chr6 (155-249)||(31799034-31799128)
chr6 (188-248)||(15323339-15323399)
chr6 (188-248)||(15353477-15353537)
chr6 (188-248)||(15373669-15373729)
chr6 (174-241)||(9051590-9051657)
chr6 (153-249)||(10293361-10293457)
chr6 (153-247)||(34176606-34176700)
chr6 (188-241)||(4097305-4097358)
chr6 (192-249)||(26318418-26318475)
chr6 (164-249)||(3841198-3841284)
[»] scaffold0026 (1 HSPs)
scaffold0026 (188-249)||(1467-1528)
[»] scaffold0012 (1 HSPs)
scaffold0012 (173-249)||(184720-184796)
[»] scaffold0071 (1 HSPs)
scaffold0071 (123-247)||(53000-53122)
[»] scaffold0240 (1 HSPs)
scaffold0240 (173-249)||(17653-17729)
[»] scaffold1414 (1 HSPs)
scaffold1414 (191-238)||(425-473)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 44146092 - 44145844
Alignment:
Q  1 tcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacttttaattacttat 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44146092 tcttaagctaagagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagatacatgatagtactacctttaattacttat 44145993  T
Q  101 attaattctttttgacttactttattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaat 200  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145992 attaattctttttgacttactttattaagggtgtatttggaaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaat 44145893  T
Q  201 gatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||    
T  44145892 gatttttaaaaaattgaattaacagcattataaatgatcatgtaatact 44145844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 43961644 - 43961523
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 227  Q
    |||||||||||||   ||||| ||| ||||||||||||||  || ||||||||| |||   |||||||||||||||||||| |||||||||||| || ||    
T  43961644 agggtgtgtttggatggagggattatgaggggagggcttatttttcttttttaaattatgaacattataaaatgatttttagaaaattgaattatcaaca 43961545  T
Q  228 tgatcaatgatcatgtaatact 249  Q
    |||| ||||||||| |||||||    
T  43961544 tgataaatgatcatataatact 43961523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44155979 - 44156052
Alignment:
Q  1 tcttaagctacgagaattcacaagaaagttggtaagatcaatagaatgtggaatatgaatgaaaagtagataca 74  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||| ||||||||||| |||||||||||||    
T  44155979 tcttaagctacgagaattcacaagaaagttggtaaaatcactaaaatggggaatatgaattaaaagtagataca 44156052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 55080815 - 55080700
Alignment:
Q  126 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacag 225  Q
    |||||||||||||||   |||||||||||| |||||| ||||| || ||||||||| |||   |||||||||||| ||||||| |||||| ||||||||     
T  55080815 taagggtgtgtttggatggagggtttaggatgggaggacttacttttcttttttaaattacgaacattataaaataatttttagaaaatttaattaacaa 55080716  T
Q  226 catgatcaatgatcat 241  Q
    |||||| |||||||||    
T  55080715 catgataaatgatcat 55080700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 22186950 - 22186832
Alignment:
Q  131 gtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatga 230  Q
    ||||||||||   |||||||||  |||||||| || || || ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||    
T  22186950 gtgtgtttggatggagggtttaaaaggggaggactcacttttcttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatga 22186851  T
Q  231 tcaatgatcatgtaatact 249  Q
    | |||||| || |||||||    
T  22186850 taaatgattatataatact 22186832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 37761673 - 37761588
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    |||||||||||||| | || ||||||||| |||  |||||||| |||||||||||| ||||||||||||||| |||||| ||||||    
T  37761673 ggaggggagggcttccttttcttttttaaattatggacattatgaaatgatttttagaaaattgaattaacaacatgataaatgat 37761588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 4437480 - 4437556
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  || |||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||    
T  4437480 cttttttaaattatggatattataaaatgatttttaaaaaattgaattaacaacatgataattgatcatataatact 4437556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 5825085 - 5825017
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  5825085 cttttttgaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 5825017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 54576362 - 54576458
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| || ||||||||  |||  |||||||||||||||||| || ||||||||||||||| | |||| |||||| || |||||||    
T  54576362 ggaggggagggcttacttttcttttttagattacggacattataaaatgatttatagaaaattgaattaacaacgtgataaatgattatataatact 54576458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 17182490 - 17182616
Alignment:
Q  125 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgattttt--aaaaaattgaattaa 222  Q
    |||| |||||||||||  ||||| |||||||||||| |  |||| || ||||||||| |||  ||| ||||||||||||||||   ||||||||||||||    
T  17182490 ttaaaggtgtgtttggatagaggttttaggaggggaagatttacttttcttttttaaattattgacgttataaaatgattttttgcaaaaattgaattaa 17182589  T
Q  223 cagcatgatcaatgatcatgtaatact 249  Q
    ||  ||||| ||||||||| |||||||    
T  17182590 caatatgataaatgatcatataatact 17182616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 44156147 - 44156207
Alignment:
Q  74 atgatagtactacttttaattacttatattaattctttttgacttactttattaagggtgt 134  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  44156147 atgatagtattacctttaattacttatattaattctctttgacttattttattaagagtgt 44156207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 51075268 - 51075218
Alignment:
Q  191 attataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||||||| ||||||||||||||||||||||| |||||| |||||||||    
T  51075268 attataaaataatttttaaaaaattgaattaacaacatgataaatgatcat 51075218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 7977530 - 7977627
Alignment:
Q  153 ggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| || ||||||| || |||   |||||||||||| || |||  ||||||||||||||| |||||| ||||||||| |||||||    
T  7977530 ggaggggagggcttacttttctttttttaaattacgaacattataaaataatattttgaaaattgaattaacaacatgataaatgatcatataatact 7977627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 54001162 - 54001234
Alignment:
Q  174 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||| |||  ||||||||||||| |||||||||||||||||||||   |||||| ||||||||| |||||||    
T  54001162 ttttttaaattacggacattataaaataatttttaaaaaattgaattaa---catgataaatgatcatataatact 54001234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 249
Target Start/End: Original strand, 21694929 - 21695020
Alignment:
Q  157 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||| || ||||||||| |||  |||| ||||||||| ||||||| |||||||| |||||  ||||| ||||||||| |||||||    
T  21694929 gggagggcttacttttcttttttaaattacggacactataaaatggtttttaataaattgaaataacaaaatgat-aatgatcatataatact 21695020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 29993826 - 29993902
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  |||| |||||||||||||||| ||||||||||||||| ||||||  ||||| || |||||||    
T  29993826 cttttttaaattacggacactataaaatgatttttagaaaattgaattaacaacatgattgatgatgatataatact 29993902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 47846090 - 47846186
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| | |||| || ||||||||| ||   ||||||||||||| ||||||| ||||||||||||| | |||||| ||| ||||| |||||||    
T  47846090 ggaggggagagtttacttttcttttttaaattctggacattataaaataatttttacaaaattgaattaagaacatgataaataatcatataatact 47846186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 188
Target Start/End: Complemental strand, 56135965 - 56135905
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaag 188  Q
    |||||||||||||   ||||||||||||||||||||||||| || ||||||||| ||||||    
T  56135965 agggtgtgtttggatggagggtttaggaggggagggcttacttttcttttttaaattaaag 56135905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 11089756 - 11089637
Alignment:
Q  125 ttaagggtgtgtttgggaagagggtttaggaggggagg---gcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatta 221  Q
    ||||||||||||||||   |||| ||||| |||||| |   | ||||||| ||||||||| |||  ||| |||||||||  |||||| ||||||||||||    
T  11089756 ttaagggtgtgtttggattgaggatttagaaggggaagatggtttacatttcttttttaaattacggactttataaaatattttttagaaaattgaatta 11089657  T
Q  222 acagcatgatcaatgatcat 241  Q
    ||| ||| || |||||||||    
T  11089656 acaacatcataaatgatcat 11089637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 9030391 - 9030329
Alignment:
Q  187 agacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||||||||| |||||| |||||| |  ||||| |||||| || |||||||    
T  9030391 agacattataaaatgatttttagaaaatttaattaataaaatgataaatgattatataatact 9030329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 35543333 - 35543411
Alignment:
Q  144 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 222  Q
    ||||||||| || |||||  ||||  || ||||||||| |||   |||||||||||| |||||||||||||||||||||    
T  35543333 gagggtttaagaagggagaacttatttttcttttttaaattaggaacattataaaataatttttaaaaaattgaattaa 35543411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 11842325 - 11842401
Alignment:
Q  134 tgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaa 210  Q
    |||||||  ||||||||||| |||||||| ||||| || |||||| || ||| ||||| ||||||||  ||||||||    
T  11842325 tgtttggatagagggtttagaaggggaggacttacttttctttttcaaattacagacactataaaatattttttaaa 11842401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 55510338 - 55510283
Alignment:
Q  193 tataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||| ||||| ||||||||||| ||||| |||||| ||||||||| |||||||    
T  55510338 tataaaat-attttaaaaaaattgaaataacaacatgatgaatgatcatataatact 55510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 39449546 - 39449417
Alignment:
Q  125 ttaagggtgtgtttgggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaat 219  Q
    |||||||||||||||||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  39449546 ttaagggtgtgtttgggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaat 39449447  T
Q  220 taacagcatgatcaatgatcatgtaatact 249  Q
    ||||| |||||| ||||||||| |||||||    
T  39449446 taacaacatgattaatgatcatataatact 39449417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 12022178 - 12022274
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||    
T  12022178 ggaggggagggcttacttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatact 12022274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 20472702 - 20472823
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagca 227  Q
    |||||||||||||  |||||| ||| ||||| ||||||||| || ||||||||| ||| |||||||||||||| | ||||| |||||||||||||||  |    
T  20472702 agggtgtgtttggatagagggattaagagggaagggcttacttttcttttttaaattacagacattataaaataaattttagaaaattgaattaacaata 20472801  T
Q  228 tgatcaatgatcatgtaatact 249  Q
    ||||  |||||||| |||||||    
T  20472802 tgatatatgatcatataatact 20472823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 9933454 - 9933356
Alignment:
Q  149 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 247  Q
    ||||||||||||||| |||| || |||||||||  |   ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||    
T  9933454 tttaggaggggagggtttacttttcttttttaaaatttggacattataaaatgattttaaaaaaattgaattaacaacatgataaatgatcatataata 9933356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 30365339 - 30365254
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    |||||||||||||| | || ||||||||| ||| ||||||||| |||||||||||| ||||||||||||||| |||||| ||||||    
T  30365339 ggaggggagggcttccttttcttttttaaattacagacattatgaaatgatttttagaaaattgaattaacaacatgataaatgat 30365254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 43732896 - 43732800
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  |||||||||||||||  ||||| ||||||||| |||||||    
T  43732896 ggaggggagggtttacttttcttttttaaattacggacattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatact 43732800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 16024341 - 16024267
Alignment:
Q  175 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||    
T  16024341 tttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatact 16024267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 29937676 - 29937615
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||    
T  29937676 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatact 29937615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 34196514 - 34196422
Alignment:
Q  156 ggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||| || |||||| |||| | |||||||||||||||||||||| ||||||||||||||| || ||| || |||||| |||||||    
T  34196514 ggggagggcttacttttctttttaaatt-acagacattataaaatgatttttagaaaattgaattaacaacaagataaacgatcatataatact 34196422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 8815187 - 8815272
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||| || ||||||||| |||  ||||||||||||||||||||| |||||||||| |||| |||||| |||||| || |||||||    
T  8815187 cttacttttcttttttaaattacggacattataaaatgatttttagaaaattgaatcaacaacatgataaatgattatataatact 8815272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 40633059 - 40633109
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  40633059 gacattataaaataatttttagaaaattgaattaacaacatgataaatgat 40633109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 8671849 - 8671898
Alignment:
Q  175 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 224  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||||||    
T  8671849 tttttaaattacggacattataaaatgatttttagaaaattgaattaaca 8671898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 9434377 - 9434430
Alignment:
Q  196 aaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||| ||||||||||||||||||||||| |||||| |||||| || |||||||    
T  9434377 aaaataatttttaaaaaattgaattaacaacatgataaatgataatataatact 9434430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 6453356 - 6453297
Alignment:
Q  190 cattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||||||||| ||||||||||||| | |||||| | | ||||| |||||||    
T  6453356 cattataaaatgatttttagaaaattgaattaataacatgataagtaatcatataatact 6453297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 43826500 - 43826453
Alignment:
Q  194 ataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    ||||||| ||||||| ||||||||||||||| |||||| |||||||||    
T  43826500 ataaaataatttttagaaaattgaattaacaacatgataaatgatcat 43826453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 8390 - 8260
Alignment:
Q  125 ttaagggtgtgttt-gggaagagggtttaggaggggaggg-----cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaa 218  Q
    |||||||||||||| |||||||| ||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  8390 ttaagggtgtgtttagggaagagagtttaggaggggaggggagggcttacattccttttttaatttaaagacgttataaaattatttttaaaaaattgaa 8291  T
Q  219 ttaacagcatgatcaatgatcatgtaatact 249  Q
    |||||| |||||| ||||||||| |||||||    
T  8290 ttaacaacatgattaatgatcatataatact 8260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 33519257 - 33519161
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||| |||| || ||| ||||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||    
T  33519257 ggaggggagggattacttttcttctttaaattacagacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatact 33519161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 48013740 - 48013624
Alignment:
Q  125 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 224  Q
    ||||||||||||||||   ||||| |||||||||||| |||||| || | ||||||| | | |||| ||||||||| ||||||| |||||||||||||||    
T  48013740 ttaagggtgtgtttggatggagggattaggaggggagagcttacttttcgtttttaaatcacagactttataaaataatttttagaaaattgaattaaca 48013641  T
Q  225 gcatgatcaatgatcat 241  Q
     |||||| |||||||||    
T  48013640 acatgataaatgatcat 48013624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 23116269 - 23116391
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaa-tgatttttaaaaaattgaattaacagc 226  Q
    |||||||||||||   |||||||||||| |||||||||||| || ||||||||| ||| ||||| ||||||| || || ||||||||||||| || || |    
T  23116269 agggtgtgtttggatggagggtttaggaagggagggcttacttttcttttttaaattacagacactataaaagtgtttattaaaaaattgaaatagcaac 23116368  T
Q  227 atgatcaatgatcatgtaatact 249  Q
    ||||| |||||| || |||||||    
T  23116369 atgataaatgattatataatact 23116391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 39646687 - 39646582
Alignment:
Q  144 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 243  Q
    ||||||||||||||||| | || || ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| ||||||  ||||| || |    
T  39646687 gagggtttaggaggggatgactcacttttattttttaaattacggacattataaaatgatttttagaaaattgaattaacaacatgattgatgatgatat 39646588  T
Q  244 aatact 249  Q
    ||||||    
T  39646587 aatact 39646582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 28074158 - 28074234
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||||    
T  28074158 cttttttaaattacggacattataaaatgatttttagaaaattgaattaacaacctgataaatgatcatataatact 28074234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 36267588 - 36267684
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||  || ||||||||| |||  || |||||||||||||||||| |||||||||| ||||  ||||| ||||||||| |||||||    
T  36267588 ggaggggagggcttagttttcttttttaaattacggatattataaaatgatttttagaaaattgaatcaacaatatgataaatgatcatataatact 36267684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 241
Target Start/End: Complemental strand, 21857560 - 21857468
Alignment:
Q  148 gtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||||||| |||| ||||| || || ||||||||   | |||||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  21857560 gtttaggaggagaggacttacttttctcttttaattacga-acattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 21857468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 30592292 - 30592353
Alignment:
Q  157 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaa 218  Q
    |||||||||||| || ||||||||| ||| ||||| ||||||||||||||||||||||||||    
T  30592292 gggagggcttacttttcttttttaaattacagacactataaaatgatttttaaaaaattgaa 30592353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 48881593 - 48881678
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    |||||||| ||||||| || ||||||||| |||  ||||||||||||| ||||| | ||||||||||||||| |||||| ||||||    
T  48881593 ggaggggatggcttacttttcttttttaaattacggacattataaaataattttcagaaaattgaattaacaacatgataaatgat 48881678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 3143673 - 3143624
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 222  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  3143673 cttttttaaattaatgacattataaaataatttttaaaaaattgaattaa 3143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 3215934 - 3215991
Alignment:
Q  192 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||||||| |||||||||||||||  ||||| ||||||||| |||||||    
T  3215934 ttataaaatgatttttagaaaattgaattaacaatatgataaatgatcatataatact 3215991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 37620983 - 37620887
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||| || | || ||||||||| |||  ||||||||||||||||||||  |||||||||||| || |||||| || ||| || |||||||    
T  37620983 ggaggggagggtttgcttttcttttttaaattatggacattataaaatgatttttggaaaattgaattatcaacatgataaaagattatataatact 37620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 16833867 - 16833808
Alignment:
Q  190 cattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||| || ||||||| ||||||||||||| | |||||| |||||||||||||||||    
T  16833867 cattataatataatttttataaaattgaattaataacatgataaatgatcatgtaatact 16833808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 48015394 - 48015323
Alignment:
Q  175 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaat 246  Q
    ||||||| ||| |||| ||||||||| ||||||  ||||||||||||||| |||||| ||||||||| ||||    
T  48015394 tttttaaattacagactttataaaataatttttggaaaattgaattaacaacatgataaatgatcatataat 48015323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 37926015 - 37925954
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||  ||||| || |||||||    
T  37926015 gacattataaaatgatgtttagaaaattgaattaacaacatgattgatgatgatataatact 37925954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 8122328 - 8122264
Alignment:
Q  182 tttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaat 246  Q
    |||| |||||||||||||| ||||||| |||||||||||||||  ||||| ||| ||||| ||||    
T  8122328 tttatagacattataaaataatttttagaaaattgaattaacaagatgataaattatcatataat 8122264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 2087785 - 2087852
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 231  Q
    ||||| || ||||||||| |||  || |||||||||| |||||||||||| |||||||||| ||||||    
T  2087785 cttacttttcttttttaaattacggatattataaaataatttttaaaaaaatgaattaacaacatgat 2087852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 17853106 - 17853051
Alignment:
Q  126 taagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaa 181  Q
    |||||||||||||||   ||||||||||||||||||||||||| || | |||||||    
T  17853106 taagggtgtgtttggatggagggtttaggaggggagggcttacttttcatttttaa 17853051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 35422168 - 35422085
Alignment:
Q  158 ggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||| |||| || |||||| || |||  ||||||||||||| ||||||| ||||||||||||||| ||| || ||| |||||    
T  35422168 ggagggtttacttttctttttaaaattacggacattataaaataatttttagaaaattgaattaacaacataataaataatcat 35422085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Original strand, 31364080 - 31364146
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaat 219  Q
    ||||||||| |||||| || ||||| ||| |||  ||||||||||||||||||| | ||||||||||    
T  31364080 ggaggggagagcttacttttcttttctaaattacggacattataaaatgattttaagaaaattgaat 31364146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 10204785 - 10204689
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| ||||| || ||||||||||||| |||||||| ||||||||||||||||||||||||||||| | | || ||||||||| |||||||    
T  10204785 ggaggggaggacttacttttcttttttaatttacagacattaaaaaatgatttttaaaaaattgaattaacaacgtaataaatgatcatataatact 10204689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 15986659 - 15986755
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| ||||  || ||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||    ||||||||| |||||||    
T  15986659 ggaggggaggacttaattttcttttttaatttacagacattataaaatgacttttaaaaaattgaattaacaacatttaaaatgatcatataatact 15986755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 33744228 - 33744316
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| |||||| |||||||||    
T  33744228 ggaggggagggtttacttttcttttttaaattatggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcat 33744316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 8551427 - 8551549
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggagggga-gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 226  Q
    |||||||||||||  ||||||||||  |||| | ||| |||||||  ||| ||||  || ||||||||||||||||||||||||||||| |||||||| |    
T  8551427 agggtgtgtttggatagagggtttaatagggaaagggtttacatttatttcttaaactacagacattataaaatgatttttaaaaaattaaattaacaac 8551526  T
Q  227 atgatcaatgatcatgtaatact 249  Q
    || || ||||||||| |||||||    
T  8551527 attataaatgatcatataatact 8551549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 40305670 - 40305788
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggagggga-----gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 222  Q
    |||||||||||||   |||||||||||||||||     |||||||  || ||||||||| ||| |||||||||||||| ||||||| |||||||||||||    
T  40305670 agggtgtgtttggatggagggtttaggaggggaagggagggcttagttttcttttttaaattacagacattataaaataatttttagaaaattgaattaa 40305769  T
Q  223 cagcatgatcaatgatcat 241  Q
    ||  ||||| |||||||||    
T  40305770 caatatgataaatgatcat 40305788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 34981019 - 34980923
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| ||||| || ||||||||| |||  |||||||||||||||||| || |||||||| |||||| |||||| |||||| || |||||||    
T  34981019 ggaggggaggacttacttttcttttttaaattatggacattataaaatgatttatagaaaattgagttaacaacatgataaatgattatataatact 34980923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 6382525 - 6382440
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||| || ||||| |||||||  |||||||||||||  |||||| ||||||||||||||| |||||| |||| |||||| |||||    
T  6382525 cttacttttcttttctaatttacggacattataaaatactttttagaaaattgaattaacaacatgataaatgttcatgtgatact 6382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 10043461 - 10043365
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| || || || ||||||||| |||   | |||||||||||||||||| ||||||||||||||| ||| || ||| ||||| |||||||    
T  10043461 ggaggggaggactcacttttcttttttaaattacgaatattataaaatgatttttagaaaattgaattaacaacattataaataatcatataatact 10043365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 6597845 - 6597920
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 248  Q
    ||||||||| |||  |||||| |||||||||||||  ||||||||| ||||| |||||| ||||||||| ||||||    
T  6597845 cttttttaaattacggacattgtaaaatgattttttgaaaattgaaataacaacatgataaatgatcatataatac 6597920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 10043055 - 10043140
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||| || |||| |||| ||| | |||||| | ||| |||| || ||||||||||||||| |||||| ||||||||| |||||||    
T  10043055 cttacttttctttcttaaattataaacattaaagaattatttctagaaaattgaattaacaacatgataaatgatcatataatact 10043140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 40858798 - 40858678
Alignment:
Q  129 gggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcat 228  Q
    ||||||||||||   |||||||||||||||||||| |||  || ||||||||| |||  |||||||||||||||| |||  ||||||||||||||| |||    
T  40858798 gggtgtgtttggatggagggtttaggaggggagggtttagttttcttttttaaattacggacattataaaatgatcttttgaaaattgaattaacaacat 40858699  T
Q  229 gatcaatgatcatgtaatact 249  Q
    ||| ||||||||| |||||||    
T  40858698 gataaatgatcatataatact 40858678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 34641199 - 34641105
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| || ||||||||| |||  |||||||||||||||  |||| ||||||||||||||| |||||| ||||||||| |||||||    
T  34641199 ggaggggagggcttacttttcttttttaaattacggacattataaaatga--tttagaaaattgaattaacaacatgataaatgatcatataatact 34641105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 249
Target Start/End: Complemental strand, 42772250 - 42772145
Alignment:
Q  144 gagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgt 243  Q
    ||||||||||||||||| || |||| || ||| || || |||  ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||| |    
T  42772250 gagggtttaggaggggaaggtttactttgcttcttaaaattacggacattataaaatgattttttgaaaattgaattaacaacatgataaatgatcatat 42772151  T
Q  244 aatact 249  Q
    ||||||    
T  42772150 aatact 42772145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 41414313 - 41414191
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattcctttttt-aatttaaagacattataaaatgatttttaaaaaattgaattaacagc 226  Q
    |||||||||||||   | |||||||||||||||| | |||| || ||||||| || | |  ||||||||||||||||||||| |||||||| |||||| |    
T  41414313 agggtgtgtttggatggtgggtttaggaggggagtgtttacttttctttttttaaatcagggacattataaaatgatttttagaaaattgagttaacaac 41414214  T
Q  227 atgatcaatgatcatgtaatact 249  Q
    ||||| ||||||||| |||||||    
T  41414213 atgataaatgatcatataatact 41414191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 48683848 - 48683727
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattc-cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagc 226  Q
    |||||||||||||  ||||||||||||||||||||| |||  ||  ||||||||| |||   ||||||||||||||||||||  |||||||||||||| |    
T  48683848 agggtgtgtttggatagagggtttaggaggggagggtttattttttcttttttaaattacgaacattataaaatgatttttaggaaattgaattaacaac 48683749  T
Q  227 a-tgatcaatgatcatgtaata 247  Q
    | |||| ||||||||| |||||    
T  48683748 attgataaatgatcatataata 48683727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 18086019 - 18086086
Alignment:
Q  157 gggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 224  Q
    ||||| |||||| || ||||||||| ||| ||||||||||||||| |||||| |||||||||||||||    
T  18086019 gggagagcttacttttcttttttaaattacagacattataaaatgttttttagaaaattgaattaaca 18086086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 8432297 - 8432372
Alignment:
Q  154 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgat 231  Q
    ||||||||| ||||| ||  |||||| | ||| |||||||||||||||||||||| ||||||||||||||| ||||||    
T  8432297 gaggggaggacttacttt--tttttttaattacagacattataaaatgatttttacaaaattgaattaacaacatgat 8432372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 16884010 - 16884102
Alignment:
Q  155 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||||||| ||||||||||||| | | | |||||||  | ||||||||||||||| ||||| |||||| ||||||||| |||||||    
T  16884010 aggggagggcttacatttcttttttaatttacaaata-tataaaaaaaattttaaaaaattgaa-taacaacatgataaatgatcatataatact 16884102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 10943669 - 10943745
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| ||| || ||| || || |||||||    
T  10943669 cttttttaaattatagatattataaaatgatttttagaaaattgaattaacaacataataaataattatataatact 10943745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 54985696 - 54985812
Alignment:
Q  121 tttattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaatt 220  Q
    |||| |||| ||||||||||   |||||||||| ||| ||| |||||  || | ||||||| |||  ||||||||||| ||||||||| |||||||||||    
T  54985696 tttactaagagtgtgtttggattgagggtttagaaggagagagcttagttttcgtttttaaattacggacattataaattgatttttagaaaattgaatt 54985795  T
Q  221 aacagcatgatcaatga 237  Q
    ||||  ||||| |||||    
T  54985796 aacaatatgataaatga 54985812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 24253911 - 24253846
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    ||||||||| |||  ||||||||||||||| ||||| ||| ||||||||||| |||||| ||||||    
T  24253911 cttttttaaattacggacattataaaatgagttttagaaagttgaattaacaacatgataaatgat 24253846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 55428553 - 55428492
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| || |||||||||| ||||||||||||||| | |||| ||||||||| |||||||    
T  55428553 gacattacaagatgatttttagaaaattgaattaacaacgtgataaatgatcatataatact 55428492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 17474261 - 17474337
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  ||||||||||||| |||||| ||||||||||||||||  ||||| ||| ||||  |||||||    
T  17474261 cttttttaaattacggacattataaaataattttttaaaaattgaattaacaatatgataaataatcaaataatact 17474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 26136006 - 26135910
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||| |||||| |||| || ||||||||| |||  ||||||||||||| ||||||  |||||||||||||||  ||||| ||| || || |||||||    
T  26136006 ggagtggagggtttacttttcttttttaaattacggacattataaaataattttttgaaaattgaattaacaatatgataaataattatataatact 26135910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 37102155 - 37102243
Alignment:
Q  124 attaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 212  Q
    |||||||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  37102155 attaagggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 37102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 42699669 - 42699743
Alignment:
Q  175 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| |||  ||||||||||||| | ||||| |||||||||||| ||  ||||| ||||||||| |||||||    
T  42699669 tttttaaattatggacattataaaataaattttagaaaattgaattatcaatatgataaatgatcatataatact 42699743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 44412528 - 44412474
Alignment:
Q  195 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||  ||||||||||||||| |||||| ||| ||||| |||||||    
T  44412528 taaaatgattttttgaaaattgaattaacaacatgataaatcatcatataatact 44412474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 46978594 - 46978540
Alignment:
Q  195 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||| |||||| |||||||| |||||| |||||| || |||||||    
T  46978594 taaaatgatttttataaaatttaattaacaacatgataaatgattatataatact 46978540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 249
Target Start/End: Original strand, 21090129 - 21090202
Alignment:
Q  176 ttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||| ||| ||| ||||||||| |||||||  ||||||||||||||| ||||||  || ||||| |||||||    
T  21090129 ttttaaattacagatattataaaacgattttttgaaaattgaattaacaacatgatatattatcatataatact 21090202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 212
Target Start/End: Original strand, 30200098 - 30200182
Alignment:
Q  128 agggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaa 212  Q
    |||||||||||||   |||||||||||||||||||| |||  || | ||||||| |||  |||| ||| ||||| ||||||||||    
T  30200098 agggtgtgtttggatggagggtttaggaggggagggtttagttttcatttttaaattacggacactatgaaatgttttttaaaaa 30200182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 35513006 - 35512910
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||||| ||  |||||||| |||  ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| |||||||    
T  35513006 ggaggggagggcttacttttattttttaaattatggacattataaaatgatttttagaaaattgaattaacaacatgataaatgatcatataatact 35512910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Original strand, 1085524 - 1085621
Alignment:
Q  153 ggaggggagggcttacatt-ccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| ||||| || |||||||||| |||  ||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||| |||||||    
T  1085524 ggaggggaggacttacttttccttttttaaattacggacattagaaaatgatttttagaaaattgaactaacagcatgataaatgatcatataatact 1085621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 47071288 - 47071172
Alignment:
Q  125 ttaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaaca 224  Q
    ||||||||||||||||    ||||||||||| |||| | || || || ||||||||| |||  ||||||||||||||||||||| |||||| ||||||||    
T  47071288 ttaagggtgtgtttggatgaagggtttaggaagggaagactaacttttcttttttaaattacggacattataaaatgatttttagaaaatttaattaaca 47071189  T
Q  225 gcatgatcaatgatcat 241  Q
     |||||| |||||||||    
T  47071188 acatgataaatgatcat 47071172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 25268472 - 25268377
Alignment:
Q  154 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||| |||| |||||||||||| |||  || |||||||||||||||||| |||||| ||| |||| | |||| ||||||||| |||||||    
T  25268472 gaggggagggtttactttccttttttaaattacggaaattataaaatgatttttagaaaatttaatcaacaacgtgataaatgatcatataatact 25268377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 249
Target Start/End: Complemental strand, 33643499 - 33643381
Alignment:
Q  130 ggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatg 229  Q
    |||||||||||  |||||||||||||||||||   ||| ||| ||||||||| |||   ||||| |||||||||||||| ||||||||||||| |  |||    
T  33643499 ggtgtgtttggatagagggtttaggaggggagaattta-atttcttttttaaattatgaacattttaaaatgatttttagaaaattgaattaataatatg 33643401  T
Q  230 atcaatgatcatgtaatact 249  Q
    || ||||||||| |||||||    
T  33643400 atgaatgatcatataatact 33643381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 2506728 - 2506652
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||| |||||||||  || || ||||||||| |||||||    
T  2506728 cttttttaaattacagatattataaaataatttttaaaaaatcgaattaacaatataataaatgatcatataatact 2506652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 13386989 - 13387049
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 248  Q
    ||||| |||||| |||||||| ||||||||||||||| |||||| ||||||||| ||||||    
T  13386989 gacatcataaaacgatttttagaaaattgaattaacaacatgataaatgatcatataatac 13387049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 51303461 - 51303515
Alignment:
Q  195 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||  ||||||||||||||| |||||| ||||||||| |||||||    
T  51303461 taaaatgatttttttaaaattgaattaacaacatgataaatgatcatataatact 51303515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 35928001 - 35927926
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| ||| |||  ||||||||| ||||| | ||||||||||||||| |||||| ||||||||| |||||||    
T  35928001 cttttttaaattacagattttataaaataatttt-agaaaattgaattaacaacatgataaatgatcatataatact 35927926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 242425 - 242331
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 247  Q
    ||||||||||| |||| || ||||||||| |||  ||||||||||||||||||||||||||||||||||||  |||||| |||||| || |||||    
T  242425 ggaggggagggtttacttttcttttttaaattacggacattataaaatgatttttaaaaaattgaattaacgacatgataaatgatgatataata 242331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 249
Target Start/End: Complemental strand, 35325456 - 35325382
Alignment:
Q  175 tttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||||||| | |||||| ||||||||| |||||||    
T  35325456 tttttaaattaacgacattataaaataatttttaaaaaattgaattaataacatgataaatgatcatataatact 35325382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 45098355 - 45098282
Alignment:
Q  176 ttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  45098355 ttttaaattacagacattataaaatggtttttgaaaaattgaattaacaacatgataaatgatcatataatact 45098282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 15085770 - 15085831
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||||||||||| ||||||||||||||| | |||| ||||||||| |||||||    
T  15085770 gacattataaaatgatttttagaaaattgaattaacaacttgataaatgatcatataatact 15085831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 36052118 - 36052210
Alignment:
Q  149 tttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||||||||| | ||||| || || |||||| ||| | |||||||||||||||||||| ||||||||||||||| ||| ||  ||||||||    
T  36052118 tttaggaggggacgacttacttttctattttaaattacatacattataaaatgatttttagaaaattgaattaacaacatcatacatgatcat 36052210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 42813828 - 42813733
Alignment:
Q  154 gaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| ||||||  || ||||||||| |||   |||||||||||||||||||| ||||||||||||||| | |||| ||| ||||| |||||||    
T  42813828 gaggggatggcttatttttcttttttaaattacgaacattataaaatgatttttagaaaattgaattaacaacctgataaataatcatataatact 42813733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 9313188 - 9313110
Alignment:
Q  161 gggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 239  Q
    |||||||| || | ||||||| ||| |||||||||||||||||||||  ||||||||||||||| | |||| |||||||    
T  9313188 gggcttacttttcctttttaaattacagacattataaaatgatttttcgaaaattgaattaacaacttgataaatgatc 9313110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 34187751 - 34187701
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgat 238  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  34187751 gacattataaaatgatttttagaaaattgaattaacaacatgataaatgat 34187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 31061547 - 31061474
Alignment:
Q  174 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 247  Q
    |||||||| ||| |||||||||||| ||| ||||  ||||||||||||||| |||||| ||||||||| |||||    
T  31061547 ttttttaaattacagacattataaagtgactttttgaaaattgaattaacaacatgataaatgatcatataata 31061474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 45257496 - 45257420
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  || |||||||||||||||||  |||||||||||||||  ||||| ||||||||| |||||||    
T  45257496 cttttttaaattacggatattataaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatact 45257420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 8554369 - 8554420
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 239  Q
    ||||||||||||| |||||| |||||||||||||||| |||||| |||||||    
T  8554369 gacattataaaataattttttaaaaattgaattaacatcatgataaatgatc 8554420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 1052811 - 1052876
Alignment:
Q  174 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatc 239  Q
    |||||||| |||  || |||||||||| ||||||| ||||||||||||||| |||||| |||||||    
T  1052811 ttttttaaattatcgatattataaaataatttttagaaaattgaattaacaacatgataaatgatc 1052876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 3094427 - 3094484
Alignment:
Q  192 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||||| ||| ||||||||||||||| |||||| ||| ||||| |||||||    
T  3094427 ttataaaatgattcttagaaaattgaattaacaacatgataaataatcatataatact 3094484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 42296349 - 42296432
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 247  Q
    ||||| || ||||||||| |||  || |||||||||||| ||||| |||| |||||||||| ||| || ||||||||| |||||    
T  42296349 cttacttttcttttttaaattacggatattataaaatgaattttagaaaaatgaattaacaacataataaatgatcatataata 42296432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 31928121 - 31928175
Alignment:
Q  195 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||  ||||||||||||| | |||||| ||||||||| |||||||    
T  31928121 taaaatgatttttttaaaattgaattaataacatgataaatgatcatataatact 31928175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 33265773 - 33265719
Alignment:
Q  195 taaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||| |||||||    
T  33265773 taaaatgattttttgaaaattgaattaacaatatgataaatgatcatataatact 33265719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 14187111 - 14187167
Alignment:
Q  155 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaa 211  Q
    |||||||||||||| || ||||||||| ||| | ||||||||||||| |||| ||||    
T  14187111 aggggagggcttacttttcttttttaaattataaacattataaaatgtttttgaaaa 14187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 22356173 - 22356141
Alignment:
Q  192 ttataaaatgatttttaaaaaattgaattaaca 224  Q
    ||||||||||||||||| |||||||||||||||    
T  22356173 ttataaaatgatttttagaaaattgaattaaca 22356141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Complemental strand, 31799128 - 31799034
Alignment:
Q  155 aggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||| | |||| || ||||||||| |||  || |||||||||| |||||| |||||||||||||||| |||||| ||||||||| |||||||    
T  31799128 aggggagagtttacttttcttttttaaattacggatattataaaataattttttaaaaattgaattaacaacatgataaatgatcatataatact 31799034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 15323399 - 15323339
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 248  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| ||||||    
T  15323399 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatac 15323339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 15353537 - 15353477
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 248  Q
    ||||||||||||||||||||| ||||||||||||||| ||| || ||||||||| ||||||    
T  15353537 gacattataaaatgatttttagaaaattgaattaacaacattataaatgatcatataatac 15353477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 15373669 - 15373729
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatac 248  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||| ||||||    
T  15373669 gacattataaaatgatttttagaaaattgaattaacaacatgacaaatgatcatataatac 15373729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 9051590 - 9051657
Alignment:
Q  174 ttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||||| |||  || |||||||||||||||||| ||||||||||||||| |||||| |||||||||    
T  9051590 ttttttaaattacggatattataaaatgatttttagaaaattgaattaacaacatgataaatgatcat 9051657  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 10293457 - 10293361
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||||| || |||||| || ||| ||| |||||||||||||||||| |||| |||||| ||| ||| || ||| ||||| |||||||    
T  10293457 ggaggggagagcttacttttctttttcaaattacagatattataaaatgatttttagaaaactgaattgacaacatcataaataatcatataatact 10293361  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 247
Target Start/End: Original strand, 34176606 - 34176700
Alignment:
Q  153 ggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaata 247  Q
    |||||||| | ||||| || ||||||||| |||   | |||||||| |||||||||||||||||||||||||  || || ||||||||| |||||    
T  34176606 ggaggggaagacttacttttcttttttaaattacgaaaattataaattgatttttaaaaaattgaattaacaatataataaatgatcatataata 34176700  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 4097305 - 4097358
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcat 241  Q
    |||||||||||||  |||||| ||||||||||||||| |||||| |||||||||    
T  4097305 gacattataaaatattttttagaaaattgaattaacaacatgataaatgatcat 4097358  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 26318475 - 26318418
Alignment:
Q  192 ttataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||||| ||||| ||||||||||||||| |||||| | ||||||| |||||||    
T  26318475 ttataaaatgacttttagaaaattgaattaacaacatgataattgatcatataatact 26318418  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 3841284 - 3841198
Alignment:
Q  164 cttacattccttttttaatttaaagacattataaaatgat--ttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||| || ||||||||| |||  ||||||||||||||||  ||||| |||||||||||||||  ||||| |||||| || |||||||    
T  3841284 cttacttttcttttttaaattacggacattataaaatgatttttttacaaaattgaattaaca-aatgataaatgatgatataatact 3841198  T

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Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 1467 - 1528
Alignment:
Q  188 gacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| ||||||||||| ||||||||||||||| | |||| ||||||||| |||||||    
T  1467 gacattatagaatgatttttagaaaattgaattaacaacttgataaatgatcatataatact 1528  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 184796 - 184720
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| |||  ||||||||||||||||||||  ||||||||||||||| ||||||  || ||||| |||||||    
T  184796 cttttttaaattatggacattataaaatgatttttttaaaattgaattaacaacatgatatattatcatataatact 184720  T

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Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 53122 - 53000
Alignment:
Q  123 tattaagggtgtgtttgggaagagggtttaggaggggagggcttacattccttttttaatttaaagacattataaaatgatttttaaaaaattgaattaa 222  Q
    ||||||||||||||||||   ||||||||||||||  |  |  ||| || ||||||||| |||  | |||||| |||||||||||  ||||||||| |||    
T  53122 tattaagggtgtgtttggatggagggtttaggaggacaatg--tacttttcttttttaaattatgggcattatgaaatgattttttgaaaattgaactaa 53025  T
Q  223 cagcatgatcaatgatcatgtaata 247  Q
    || |||||| ||||||||| |||||    
T  53024 caacatgataaatgatcatataata 53000  T

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Target: scaffold0240 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 17729 - 17653
Alignment:
Q  173 cttttttaatttaaagacattataaaatgatttttaaaaaattgaattaacagcatgatcaatgatcatgtaatact 249  Q
    ||||||||| ||| | | |||||||||||||||||  |||||||||||| || |||||| ||| ||||| |||||||    
T  17729 cttttttaaattacaaatattataaaatgattttttgaaaattgaattagcaacatgataaataatcatataatact 17653  T

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Target: scaffold1414 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 473 - 425
Alignment:
Q  191 attataaaatgatttttaaaaaatt-gaattaacagcatgatcaatgat 238  Q
    |||||||||||||||||| ||||||  ||||||||||||||| ||||||    
T  473 attataaaatgatttttagaaaattaaaattaacagcatgataaatgat 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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