View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_high_15 (Length: 239)
Name: NF17860_high_15
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 35503436 - 35503229
Alignment:
| Q |
1 |
tacatttacgatatataagaacatacaacaatgataacaataatattcaaatttgagagggggcatgagcactgaaacaacagcatgggcaagttgtaat |
100 |
Q |
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| T |
35503436 |
tacatttacgatatataagaacatacaacaatgatgacaataatattcaaatttcagagggggcatgagcactgaaacaacaacatgggcaagttgtaat |
35503337 |
T |
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| Q |
101 |
tgctgagttaaaaatacata-----atatgtataaggtggattattaaaaatcaatgtttgtaagcaataaattgaaaatgagttccatcaaagaataaa |
195 |
Q |
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|| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35503336 |
tgatgagtttaaaatacataatataatatgtataaggtggattattaaaaatcaatgtttgtaagcaataaattgaaaatgagttccatcaaagaataaa |
35503237 |
T |
|
| Q |
196 |
ttattttt |
203 |
Q |
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| T |
35503236 |
ttgttttt |
35503229 |
T |
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