View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17860_high_7 (Length: 332)

Name: NF17860_high_7
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17860_high_7
NF17860_high_7
[»] chr6 (8 HSPs)
chr6 (10-314)||(2621467-2621771)
chr6 (10-310)||(2589904-2590204)
chr6 (31-310)||(2674756-2675038)
chr6 (38-310)||(2571275-2571547)
chr6 (91-305)||(2449258-2449472)
chr6 (141-310)||(2436074-2436243)
chr6 (88-310)||(2642967-2643189)
chr6 (31-75)||(2436297-2436341)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 2621771 - 2621467
Alignment:
Q  10 catcatcaactacaaatttagtaacaacatcttcaacgacattgttataattaaaaacatcatcactgcctcgcgttgttgagttgaaagagttagatgg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621771 catcatcaactacaaatttagtaacaacatcttcaacgacattgttataattaaaaacatcatcactgcctcgcgttgttgagttgaaagagttagatgg 2621672  T
Q  110 actcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaaca 209  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2621671 actcacgagtctacaaccactcatgttttgcatgtgatctctattcatgatagatggggtgtcatcggtttggtccttttttgtttgctggagacgaaca 2621572  T
Q  210 agggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcatttt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2621571 agggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttccgcgatcataccattttgaacaaccgcaatgatgtctgcatttt 2621472  T
Q  310 gaatg 314  Q
    |||||    
T  2621471 gaatg 2621467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 2590204 - 2589904
Alignment:
Q  10 catcatcaactacaaatttagtaacaacatcttcaacgacattgttataattaaaaacatcatcactgcctcgcgttgttgagttgaaagagttagatgg 109  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||| ||||||| |||| |||||| || ||| |||| ||    
T  2590204 catcatcaactacaaatttagtagcaacatcttcaacaacattgttatagtttaaaacatcatcattgcctcgtgttgctgagttcaaggagctagaagg 2590105  T
Q  110 actcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaaca 209  Q
    ||| ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||| ||  ||| |||| |||||||||| || |||||||||    
T  2590104 actaacgagtctacaagtactcgtgttttgcatgtgatctttattcatgatagatggggtgtcgtcagtttcgtccctttttgtttgttgaagacgaaca 2590005  T
Q  210 agggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcatttt 309  Q
    |||||||| ||||  |||||||||| ||||| ||||||||| ||||||||| ||||    ||| |||||||||||||||| |||||||||||||||||||    
T  2590004 agggaggcataaattgaattgtcatcttgcacgaggctttcgtgagatcctatttccataatcttaccattttgaacaactgcaatgatgtctgcatttt 2589905  T
Q  310 g 310  Q
    |    
T  2589904 g 2589904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 31 - 310
Target Start/End: Original strand, 2674756 - 2675038
Alignment:
Q  31 taacaacatcttcaacgacattgttataattaaaaacatcatcactgcctcgcgttgttgagttgaaagagtt---agatggactcacgagtctacaacc 127  Q
    |||||| ||||||||| ||||||||||||||||  | ||||||||  ||  | ||  |||||||||||||| |   |||  |||| |||||||||| ||     
T  2674756 taacaatatcttcaacaacattgttataattaaggatatcatcaccaccatgtgtcattgagttgaaagagctgctagaacgacttacgagtctacgact 2674855  T
Q  128 acccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaa 227  Q
    || |||||||||||||||| || |||||||||||||||| ||||||||  |||| || ||| | ||||| ||||||||||| ||||||| ||||||||||    
T  2674856 actcgtgttttgcatgtgacctctattcatgatagatggagtgtcatcagtttgatcatttctagtttgttggagacgaacgagggaggtgtaaagagaa 2674955  T
Q  228 ttgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttg 310  Q
    || |||||||||||||||||||| |||||||| |||||   |||| |||||||||| ||||| ||||||||||||||||||||    
T  2674956 ttttcattttgcatgaggctttcgtgagatcccgtttccatgatcttaccattttggacaactgcaatgatgtctgcattttg 2675038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 38 - 310
Target Start/End: Original strand, 2571275 - 2571547
Alignment:
Q  38 atcttcaacgacattgttataattaaaaacatcatcactgcctcgcgttgttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttt 137  Q
    |||||||||  |||||||||||||||  | ||||||||  ||  | ||  |||||||||||||| ||||  ||||||| ||||||| || || |||| ||    
T  2571275 atcttcaacatcattgttataattaacgatatcatcaccaccgtgtgtcattgagttgaaagagctagaatgactcacaagtctacgactactcgtgatt 2571374  T
Q  138 tgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcatttt 237  Q
    | |||||||||| |||||||||||||||| ||||||||  ||||||| ||| | ||||| ||||||||||||||||| | ||||||||||||||||||||    
T  2571375 tccatgtgatctctattcatgatagatggagtgtcatcactttggtcatttctagtttgttggagacgaacaagggatgtgtaaagagaattgtcatttt 2571474  T
Q  238 gcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttg 310  Q
    |||||||||| || ||||||||  ||||   || || |||||||||||| |||||||| ||||||||||||||    
T  2571475 gcatgaggctatcgtgagatcccatttccatgaccagaccattttgaacgaccgcaataatgtctgcattttg 2571547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 91 - 305
Target Start/End: Complemental strand, 2449472 - 2449258
Alignment:
Q  91 agttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtccttttt 190  Q
    ||||||||||| ||||  ||||||||||| ||  || || ||||||||| ||||||||| |||||||||||| ||| ||||  ||  ||||||| ||| |    
T  2449472 agttgaaagagctagaacgactcacgagtgtatcactacacgtgttttggatgtgatctctattcatgataggtggagtgtggtcactttggtcatttct 2449373  T
Q  191 tgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaacaacc 290  Q
     ||||| || |||||||| ||||||| |||||||||  ||||||||||||| |||||||| ||||||||||||||  ||||| ||||||||||||| |      
T  2449372 agtttgttgaagacgaacgagggaggtgtaaagagagctgtcattttgcataaggctttcgtgagatcctgtttccacgatcttaccattttgaacgatt 2449273  T
Q  291 gcaatgatgtctgca 305  Q
    |||||||| ||||||    
T  2449272 gcaatgatatctgca 2449258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 310
Target Start/End: Complemental strand, 2436243 - 2436074
Alignment:
Q  141 atgtgatctttattcatgatagatggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgca 240  Q
    ||||||| |||||||||||||||| |||| ||| ||  |||||| ||||| || || |||||| |||| ||||| | |||||  ||| ||||||||||||    
T  2436243 atgtgatgtttattcatgatagatagggtatcaccgtcttggtcatttttggtgtgttggagatgaactagggatgtgtaaatggaactgtcattttgca 2436144  T
Q  241 tgaggctttcatgagatcctgtttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttg 310  Q
    |||||||||| ||||||||||||||   |||| |||||||||||||||| ||||||||||||||||||||    
T  2436143 tgaggctttcgtgagatcctgtttccatgatcttaccattttgaacaactgcaatgatgtctgcattttg 2436074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 310
Target Start/End: Original strand, 2642967 - 2643189
Alignment:
Q  88 ttgagttgaaagagttagatggactcacgagtctacaaccacccgtgttttgcatgtgatctttattcatgatagatggggtgtcatcgatttggtcctt 187  Q
    |||||||||||||| ||||  ||||||||||||||| || || |||||||||||||||| || | |||||||||||||  | ||| ||  ||||||| ||    
T  2642967 ttgagttgaaagagctagaacgactcacgagtctacgactactcgtgttttgcatgtgacctctgttcatgatagatgcagggtcctcattttggtcatt 2643066  T
Q  188 ttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcataccattttgaaca 287  Q
    | | ||||| ||||||||||| || |||| |||||||||||| |||| ||||  |||||||||||||| |||||||||    ||| | ||||||||||      
T  2643067 tctagtttgttggagacgaacgagagaggtgtaaagagaattttcatcttgcgcgaggctttcatgagttcctgtttccattatcttgccattttgaaac 2643166  T
Q  288 accgcaatgatgtctgcattttg 310  Q
    || ||||||||||| ||||||||    
T  2643167 actgcaatgatgtcagcattttg 2643189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 2436341 - 2436297
Alignment:
Q  31 taacaacatcttcaacgacattgttataattaaaaacatcatcac 75  Q
    |||||||||||||||| ||||||||||||||||  |||||| |||    
T  2436341 taacaacatcttcaacaacattgttataattaacgacatcaccac 2436297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University