View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_11 (Length: 279)
Name: NF17860_low_11
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 28034813 - 28035065
Alignment:
| Q |
14 |
acaatattttatcactacgtttacttctgtgtttttattctacgatttaattaatttgattctaacat-----gtaagtta--annnnnnngtaacaccg |
106 |
Q |
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| T |
28034813 |
acaatattttaacactacgtttacttttatgtttttattctatgatttaattaatt-gattctaacataacatgtaagttataatttttttgtaacacca |
28034911 |
T |
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| Q |
107 |
gcaaagacttgtactgtttcactctaggcatacaagtaaacattccaatacaaatagacagggtaaaattcctttggagaaaacgttggaatgtaacaag |
206 |
Q |
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|||||||| ||||||||||||||| |||||||||||| ||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
28034912 |
gcaaagacatgtactgtttcactccaggcatacaagtgaacattctaatacaaaaagacag--taaaattcctttgtagaaaacgttggaatgtaacaag |
28035009 |
T |
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| Q |
207 |
taaaacatttgttgattcagtatgttatgcttaatctatacaaactacactcatgc |
262 |
Q |
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| T |
28035010 |
taaaacatttgttgattcagtatgttatgcttaatctatacaaactacactcatgc |
28035065 |
T |
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