View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_13 (Length: 276)
Name: NF17860_low_13
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 8066494 - 8066744
Alignment:
| Q |
18 |
ataatgtagtatcgaagattgtgagatcctccttagatgtccatttagtcaattgataatataattcaacaccggtagggtttgttaccatcttaaccat |
117 |
Q |
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| T |
8066494 |
ataatgtagtatcgaagattgtgagatcctccttagatgtccatttggtcaattgataatataattcaacaccggtagggtttgttaccatcttaaccat |
8066593 |
T |
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| Q |
118 |
tgaagttaaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatt |
217 |
Q |
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| T |
8066594 |
tgaagttaaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatt |
8066693 |
T |
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| Q |
218 |
ttattgtgcgccaataaacgcatgacactgtgaacacaaccggcctttgct |
268 |
Q |
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| T |
8066694 |
ttattgtgcgccaataaacgcatgacactatgaacacaaccggcttttgct |
8066744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 8074929 - 8075179
Alignment:
| Q |
18 |
ataatgtagtatcgaagattgtgagatcctccttagatgtccatttagtcaattgataatataattcaacaccggtagggtttgttaccatcttaaccat |
117 |
Q |
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| T |
8074929 |
ataatggagtctcaaagattgtgaggtcctccattgatgtccatgtgctcaattggtaatgtttttcgacgcgagttgggtttgttagcaacttaaccat |
8075028 |
T |
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| Q |
118 |
tgaagttaaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatt |
217 |
Q |
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| T |
8075029 |
tgaagataaacaatgatcagttcctttcacaagaagctttgatgttggagaaagagcatatgcttctttgttgtcgtctatcttcacaattgcgaagatt |
8075128 |
T |
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| Q |
218 |
ttattgtgcgccaataaacgcatgacactgtgaacacaaccggcctttgct |
268 |
Q |
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| T |
8075129 |
ttattgtgcgccaataaacgcatgacactgtgaacacaaccggcttttgct |
8075179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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