View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17860_low_14 (Length: 250)
Name: NF17860_low_14
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 35503686 - 35503493
Alignment:
| Q |
49 |
aagttttcaaccttatccacttattataccaacctggcactcacgggtaactccttataacgctatatatccattttgtttgttatttttctctattttt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503686 |
aagttttcaaccttatccacttattatacccacctggcactcacgggtaactccttataacgctatatatccattttgtttgttatttttctctattttt |
35503587 |
T |
|
| Q |
149 |
actaaaaaggtataaaggttttgcat--------------tgagaactctatcgattatcacaaaatccgctaatgtcctctatttctaacatca |
229 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35503586 |
actaaaaa-gtataaaggttttgcattacacatattgaaatgagaactctatcgattatcacaaaatccgctaatgtcctctatttctaacatca |
35503493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University