View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_2 (Length: 467)
Name: NF17860_low_2
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 18421482 - 18421040
Alignment:
| Q |
17 |
acttttcaagtctgtgtagggnnnnnnnttgaaatcaacttggagttggtatatctttatctggaattctgattatttgagtacagaaggttttttaaac |
116 |
Q |
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| T |
18421482 |
acttttcaagtctgtgtagggaaaaaaattgaaatcaacttggagttggtatatctttatctggaattctgattatttgagtacag---gttttttaaac |
18421386 |
T |
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| Q |
117 |
taattcaatccggcccaaaaatgactgtgaagcacggacacaaacattgacatctgacatgactctaatactgacacgtagatagagataataatttaag |
216 |
Q |
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| T |
18421385 |
taattcaatccggcccaaatatgactgtgaagcacggacacaaacattgacatctgacatgactctaatactgacacgtagatagagataataatttaag |
18421286 |
T |
|
| Q |
217 |
aaaatagagtgattgaatgaaacaacatttgttagagtcatgccgctaaacgcactgcattaaggttgttcaaacacggacggacctagtttaatacttt |
316 |
Q |
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| T |
18421285 |
aaaatagagtgatcgaatgaaacaacatttgttcgagtcatgccgctagacacactgcattaaggttgttcaaacacggacggacctagtttaatacttt |
18421186 |
T |
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| Q |
317 |
cttttgtcacatttataaataaaaattcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaa |
416 |
Q |
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| T |
18421185 |
ctttggtcacatttataaacaaaaattcatcaaataactggtatatcgagactatattatagttcaaatttattagtcattcaatgaatctaaaaatcaa |
18421086 |
T |
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| Q |
417 |
tatttacttataaatgtgacgagaatgagtactctcctttgctact |
462 |
Q |
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| T |
18421085 |
tatttacttataaatgtgacgagaatgagtactctcctttgttact |
18421040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 54972773 - 54972723
Alignment:
| Q |
191 |
cacgtagatagagataataatttaagaaaatagagtgattgaatgaaacaa |
241 |
Q |
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| T |
54972773 |
cacgtagatataggtaatagtttaagaaaatagagtgattgaatgtaacaa |
54972723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 436
Target Start/End: Complemental strand, 45411051 - 45410953
Alignment:
| Q |
341 |
attcattaaataactggtataacgagactatattatagttcaaatttattagtcattcaatgaatct---aaaaatcaatatttacttataaatgtgac |
436 |
Q |
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| T |
45411051 |
attcattaaataactgatgtatcgggataatattatagtccagatatatcagttattcaacgaatctgaaaaaaaacaatatttacttataaatgtgac |
45410953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 26643348 - 26643288
Alignment:
| Q |
186 |
actgacacgtagatagagataataatttaagaaaatagagtgattgaatgaaacaacattt |
246 |
Q |
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| T |
26643348 |
actgacacgtcgatactggtaataatttaagaaaatagaataattgaatgtaaccacattt |
26643288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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