View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17860_low_3 (Length: 414)
Name: NF17860_low_3
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 2621748 - 2622155
Alignment:
| Q |
1 |
ttactaaatttgtagttgatgatgataatagtaaaaacaagaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2621748 |
ttactaaatttgtagttgatgatgataatagtaaaaacaagaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagca |
2621847 |
T |
|
| Q |
101 |
aacatgcttgggctgtataaatgcgattttagtcggtgcaattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2621848 |
aacatgcttgggctgtataaatgcgattttagtcggtgcaattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaac |
2621947 |
T |
|
| Q |
201 |
catgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2621948 |
catgatgagatcaagaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttg |
2622047 |
T |
|
| Q |
301 |
cttacatgggagagtacttgactaagaggattagagaaaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
2622048 |
cttacatgggagagtacttgactaagaggattagagaaaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattctac |
2622147 |
T |
|
| Q |
401 |
aggttctg |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
2622148 |
aggttctg |
2622155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 2590206 - 2590600
Alignment:
| Q |
17 |
tgatgatgataatagtaaaaacaaga---aggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggc |
113 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2590206 |
tgataatgataatagtaaagacaagaagaaggttgaggttccttcctttaaatggttgttggcaatgaatggaccagagtggaagcaaacatgtttgggt |
2590305 |
T |
|
| Q |
114 |
tgtataaatgcgattttagtcggtgcaattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatca |
213 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2590306 |
tgtataaatgcggttttatttggtgcaattcaacctgtgtattcttttggattggggtcggttatatcggtttattttttggagaaccatgatgagatca |
2590405 |
T |
|
| Q |
214 |
agaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggaga |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2590406 |
agaagcaaattaggatttatgcactttgttttctagggttggctgttatctcaatggttgttaatgtacttcaacattatagctttgcttacatgggaga |
2590505 |
T |
|
| Q |
314 |
gtacttgactaagaggattagagaaaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccacaggttctg |
408 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
2590506 |
atacttgactaagagggttagagaacgaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggttctg |
2590600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 40 - 404
Target Start/End: Complemental strand, 2642858 - 2642494
Alignment:
| Q |
40 |
agaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgc |
139 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||| ||||||| |
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|
| T |
2642858 |
agaaggtcaaggtttcttcgtttcaaaggttgttggcaatgaatgtgccagagtggaagcaagcatgtttgggttgtataaatgcggttttattcggtgc |
2642759 |
T |
|
| Q |
140 |
aattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactt |
239 |
Q |
| |
|
|||| |||||| | ||| || | | ||||||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||| |||||| || |
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|
| T |
2642758 |
gattcgacctgtatattcgttcgcaatggggtcagttatatcagtttattttttggaagaccatgatgagatcaagaggcaaattaggatctatgcattt |
2642659 |
T |
|
| Q |
240 |
tgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttgactaagaggattagagaaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
2642658 |
tgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagaatacttgactaagagggttagagaac |
2642559 |
T |
|
| Q |
340 |
agatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccacaggt |
404 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2642558 |
gaatgttttccaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggt |
2642494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 48 - 408
Target Start/End: Complemental strand, 2571199 - 2570839
Alignment:
| Q |
48 |
gaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattcaac |
147 |
Q |
| |
|
|||||||| || |||| |||||||||||| |||||||| ||||||||||||||| |||| ||||| ||| | |||||| ||||| ||||||| ||||||| |
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|
| T |
2571199 |
gaggttccatcgtttcgaaggttgttggccatgaatgggccagagtggaagcaagcatgtttgggttgttttaatgcggttttattcggtgcgattcaac |
2571100 |
T |
|
| Q |
148 |
ctgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttct |
247 |
Q |
| |
|
|||||| ||| |||| | |||||||||||||||| ||||||||| | ||| |||| |||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
2571099 |
ctgtgtattcgtttgcaatggggtcggttatatcagtttattttattgaggaccacgatgagatcaagaaacaaattaggatttatggtttttgttttct |
2571000 |
T |
|
| Q |
248 |
agggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttgactaagaggattagagaaaagatgttt |
347 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
2570999 |
agggctggctgttatttcaatggttattaatatgcttcaacattatagctttgcttacatgggagagtatttgactaagagggttagagaaaaaatgttt |
2570900 |
T |
|
| Q |
348 |
tctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccacaggttctg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2570899 |
tctaagatactcacatttgaagttggttggtttgatgaagatcaaaattctacaggttctg |
2570839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 40 - 408
Target Start/End: Complemental strand, 2674695 - 2674327
Alignment:
| Q |
40 |
agaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgc |
139 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||| ||||||| || || ||||||||| |||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
2674695 |
agaaggtcaaggttccttcgtttcgaaggttgttggctatgaatgtgcctgaatggaagcaagcatgtttgggttgtataaatgcagttttattcggtgc |
2674596 |
T |
|
| Q |
140 |
aattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactt |
239 |
Q |
| |
|
|||||||||||| | ||| |||| ||||||||||||| |||| ||||||||| ||||| ||||||||||||| ||||||||||||||||| |||| || |
|
|
| T |
2674595 |
aattcaacctgtatattcgtttgcattggggtcggttgtatcagtttattttctggaggaccatgatgagattaagaagcaaattaggatctatgtgttt |
2674496 |
T |
|
| Q |
240 |
tgttttctagggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttgactaagaggattagagaaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2674495 |
tgttttctagggttggctgttatctcattggttgttaatgtacttcaacattatagctttgcttacatgggagagtacttgactaagagggttagagaaa |
2674396 |
T |
|
| Q |
340 |
agatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccacaggttctg |
408 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
2674395 |
ggatgttttccaagatactcacttttgaagttggttggtttgatgaagatcgaaattctacaggttctg |
2674327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 39 - 404
Target Start/End: Original strand, 2449577 - 2449942
Alignment:
| Q |
39 |
aagaaggttgaggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtg |
138 |
Q |
| |
|
|||||||| |||||||||| |||| ||| ||||| |||||||||| ||||| ||||||||| | || ||||| | | | |||||| ||||| |||| |
|
|
| T |
2449577 |
aagaaggtaaaggttccttcatttcgaagattgttagcaatgaatgtgccagaatggaagcaagcgtgtttgggatttttgaatgcggttttatctggtg |
2449676 |
T |
|
| Q |
139 |
caattcaacctgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcact |
238 |
Q |
| |
|
| || |||| |||||||||||| | ||||||| ||| || ||||||||| | | ||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
2449677 |
cggttgaaccgatgttttcatttgcaatggggtcaactatttctgtttattttcttaacaaccatgatgagatcaagaagcagattaggatttatatgct |
2449776 |
T |
|
| Q |
239 |
ttgttttctagggttggctgttatc-tcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttgactaagaggattagaga |
337 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||| ||||||||||||| |||||| | ||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
2449777 |
ttgttttctagggttagcc-ttatcctcaatggtttttaatgtgcttcagcattattgttttgcatacatgggagagtacttaactaagagggttagaga |
2449875 |
T |
|
| Q |
338 |
aaagatgttttctaagatactcacatttgaagttggttggtttgatgaagatcaaaattccacaggt |
404 |
Q |
| |
|
|| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2449876 |
aagagtgttttccaagatactcacttttgaagttggttggtttgatgaagatcaaaattctacaggt |
2449942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 49 - 397
Target Start/End: Original strand, 2436384 - 2436732
Alignment:
| Q |
49 |
aggttccttcctttcaaaggttgttggcaatgaatggaccagagtggaagcaaacatgcttgggctgtataaatgcgattttagtcggtgcaattcaacc |
148 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||||||| ||||| ||||||||| ||| ||||| ||| | | | | ||||| ||||||| ||||||| |
|
|
| T |
2436384 |
aggttccttcatttcgaagattgttggcaatgaatgctccagaatggaagcaagtatgtttggggtgtttgagttcagttttattcggtgcggttcaacc |
2436483 |
T |
|
| Q |
149 |
tgtgttttcatttggattggggtcggttatatcggtttattttttggagaaccatgatgagatcaagaagcaaattaggatttatgcactttgttttcta |
248 |
Q |
| |
|
| | | |||||| | |||| | ||| ||||||||||||| || | ||| ||||||||| |||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
2436484 |
tatatccacatttgcaacgggggcagttgcatcggtttattttctgaatgaccgtgatgagatgaagaagcagattaggatgtatgctttttgttttcta |
2436583 |
T |
|
| Q |
249 |
gggttggctgttatctcaatggttgttaatgtgcttcaacattatagctttgcttacatgggagagtacttgactaagaggattagagaaaagatgtttt |
348 |
Q |
| |
|
||||||||| | ||| || ||| | ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2436584 |
gggttggctttggcctctattgttttcaatatgcttgaacagtatagctttgcttacatgggagagtacttgactaagaggattagagaaagaatgtttt |
2436683 |
T |
|
| Q |
349 |
ctaagatactcacatttgaagttggttggtttgatgaagatcaaaattc |
397 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2436684 |
ccaagatactcacttttgaagttggttggtttgatgaggatcaaaattc |
2436732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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