View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_5 (Length: 400)
Name: NF17860_low_5
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 23027711 - 23027344
Alignment:
| Q |
17 |
aaaataatgtcgcactcaaacgacaaaatcatgaaggatgaagaaagagaaatgcgagagaaaatataaaggagagagaaggtgaaacttcattcataag |
116 |
Q |
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| T |
23027711 |
aaaataatgtcgcactcaaacgacaaaatcatgaaagatgaagaaagagaaatgagagagaaaagataaaggagagagaaggtgaaacttcattcataag |
23027612 |
T |
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| Q |
117 |
aaacatgaatatgcaggataaattattacatttattcatctatgaagtgtaacctccatcaatagctataacttgtccagtgatgtgtgatgcagctgga |
216 |
Q |
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| T |
23027611 |
aaacatgaatatgcaggatatattattacatttattcatctatgaagtataacctccatcaatagctataatttgtccagtgatgtgtgatgcagctgga |
23027512 |
T |
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| Q |
217 |
agacaaagaaaagcaaccaatgctgatatctctctagtctctcccatacgacctgtaggagtttgagagactataccagctatagctttatacccttcag |
316 |
Q |
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| T |
23027511 |
agacaaagaaaagcaaccaatgctgatatctctttagtctctcccatacgacctgtaggagtttgagagactataccagctatagctttatacccttcag |
23027412 |
T |
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| Q |
317 |
agtcataatcctgtaagaaacagtataaacatatttatacttatcaacaactctcaactttaaatatg |
384 |
Q |
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| T |
23027411 |
agtcataatcctgtaagaaacagtataaacatatttatacttatcagcaactctcaattttaaatatg |
23027344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 304
Target Start/End: Complemental strand, 23039730 - 23039586
Alignment:
| Q |
160 |
gaagtgtaacctccatcaatagctataacttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatgctgatatctctctagtctctc |
259 |
Q |
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| T |
23039730 |
gaagtgaaacctccatcaatagctataacttgtccagtgatgtatgatgcagctggaagacaaagaaaggcaactagtgatgatatctctttaggctctc |
23039631 |
T |
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| Q |
260 |
ccatacgacctgtaggagtttgagagactataccagctatagctt |
304 |
Q |
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| T |
23039630 |
ccatacgacccataggtgtttgagacactacaccatctacagctt |
23039586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 23086774 - 23086696
Alignment:
| Q |
167 |
aacctccatcaatagctataacttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatgctgatat |
245 |
Q |
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| T |
23086774 |
aacctccatctgcagctataatttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatcctgatat |
23086696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 23093071 - 23092961
Alignment:
| Q |
181 |
gctataacttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatgctgatatctctctagtctctcccatacgacctgtaggagttt |
280 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||| || ||||| ||| |||| |
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| T |
23093071 |
gctataatttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatcctgatatatctttaggttctccaatccgaccaccaggtgttt |
23092972 |
T |
|
| Q |
281 |
gagagactata |
291 |
Q |
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|||| |||||| |
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| T |
23092971 |
gagacactata |
23092961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 23071070 - 23070997
Alignment:
| Q |
180 |
agctataacttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaatgctgatatctctctag |
253 |
Q |
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|||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
23071070 |
agctataatctgtccagtgatatatgaagcagctggaagacaaagaaaagcaaccaaggctgatatgtctctag |
23070997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 30698850 - 30698917
Alignment:
| Q |
169 |
cctccatcaatagctataacttgtccagtgatgtgtgatgcagctggaagacaaagaaaagcaaccaa |
236 |
Q |
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|||||||||| || ||||||||||||||||||| || |||||||| |||||||| ||||| ||||| |
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| T |
30698850 |
cctccatcaacagaaataacttgtccagtgatgtaagaagcagctggcagacaaaggaaagccaccaa |
30698917 |
T |
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