View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_6 (Length: 379)
Name: NF17860_low_6
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 41640878 - 41640526
Alignment:
| Q |
8 |
tgagatgaagggtgagtttaacacgtgacgcggtgttcttatttgattcgagatggactttacgtgtggtatcagcggtgacaacatcgccgatcgtgat |
107 |
Q |
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| T |
41640878 |
tgagatgaagggtgagtttaacacgtgacgcggtgtttttatttgattcgagatggactttacgtgtggtatcggcggtgacaacatcgccgatcgtgat |
41640779 |
T |
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| Q |
108 |
gaggttgtaaaggatccacacatcatcgggttcttctgcaattattttaacagttcctctttggttgagagcaaaatccttttccaaaagcttcatatca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640778 |
gaggttgtaaaggatccacacatcatcgggttcttctgcaattattttaacagttcctctttggttgagagcaaaatccttttccaaaagcttcatatca |
41640679 |
T |
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| Q |
208 |
aattaattaatttccaaagtatgtggtgagaatgagatgttacggagatatagcgttgtcgcaagtttttatgtggctgcgtgtgtgagccctaatgttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640678 |
aattaattaatttccaaagtatgtggtgagaatgagatgttacggagatatagcgttgtcgcaagtttttatgtggctgcgtgtgtgagccctaatgttt |
41640579 |
T |
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| Q |
308 |
tactttatgtagttatagtgtattttgggaaggttatagttgcgtgttatgtc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640578 |
tactttatgtagttatagtgtattttgggaaggttatagttgcgtgttatgtc |
41640526 |
T |
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