View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17860_low_8 (Length: 330)
Name: NF17860_low_8
Description: NF17860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17860_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 11592670 - 11592982
Alignment:
| Q |
1 |
tgaacaacatgttccttaaacgttagtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttat |
100 |
Q |
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|||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11592670 |
tgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttat |
11592769 |
T |
|
| Q |
101 |
cataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11592770 |
cataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatc |
11592869 |
T |
|
| Q |
201 |
aattgtttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagta |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
11592870 |
aattgtttctgaggctttatcctttgctttctccatcacatgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagta |
11592969 |
T |
|
| Q |
301 |
tgaagattataat |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
11592970 |
tgaagattataat |
11592982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 11645449 - 11645137
Alignment:
| Q |
1 |
tgaacaacatgttccttaaacgttagtcccatctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttat |
100 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11645449 |
tgaacaacatgttctttaaacgtttgtcccatttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttat |
11645350 |
T |
|
| Q |
101 |
cataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
11645349 |
cataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatc |
11645250 |
T |
|
| Q |
201 |
aattgtttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctctttagcatctctagcattaggagta |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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|
| T |
11645249 |
aattgtttctgaggctttatcctttgctttctccatcacatgtttgcatttaccatatgcatcacaaataagctctttagcatttttggcattaggagta |
11645150 |
T |
|
| Q |
301 |
tgaagattataat |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
11645149 |
tgaagattataat |
11645137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 278
Target Start/End: Complemental strand, 37180940 - 37180666
Alignment:
| Q |
5 |
caacatgttccttaaacgttagtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcat |
103 |
Q |
| |
|
||||||||||||| || ||| ||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |
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|
| T |
37180940 |
caacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataaacatcattagctttatcat |
37180841 |
T |
|
| Q |
104 |
aaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaat |
203 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
37180840 |
aaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaatatctctcttcttatcaat |
37180741 |
T |
|
| Q |
204 |
tgtttctgaagctttatcctttgctttctccattacatgtttgcatttaccatatgcatcacaaataagctcttt |
278 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37180740 |
tgtttatgaggctttatcctttgctttctccattgcgtgtttgcatttaccatatgcatcacaaataagctcttt |
37180666 |
T |
|
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