View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_10 (Length: 488)
Name: NF17861_high_10
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 161 - 470
Target Start/End: Original strand, 10412262 - 10412571
Alignment:
| Q |
161 |
aacacatactctgagaatgaaattgtgatcgccccaaacaggaatgcagagaagtgattttgtatcaaaagggattggttgctgaagttggaccaaatta |
260 |
Q |
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| T |
10412262 |
aacacatactctgagaatgaaattgtgatcgccccaaacaggaatgcagagaagtgattttgtatcaaaagggattggttgctgaagttggaccaaatta |
10412361 |
T |
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| Q |
261 |
gaggcacatgaatctagagaagtcacaaggattgatgaactacaaaggagaatgagaaagattaatagacaaaagtatgtcaacttcatttttgtgtgga |
360 |
Q |
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| T |
10412362 |
gaggcacatgaatctagagaagtcacaaggattgatgaactacaaaggagaatgagaaagattaataggcaaaagtatgtcaacttcatttttgtgtgga |
10412461 |
T |
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| Q |
361 |
cggccattagaagtgataggaataggatgtagccttaattaattatgtcatgtttaatttaataaagaaagataagaaatgttatagattatattaacct |
460 |
Q |
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| T |
10412462 |
aggccattagaagtgataggaataggatgtaaccttaattaattatgtcatgtttaatttaataaagaaagataagaaatgttataggttatattaacct |
10412561 |
T |
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| Q |
461 |
tggagttaac |
470 |
Q |
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| T |
10412562 |
tggagttaac |
10412571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 10412117 - 10412178
Alignment:
| Q |
16 |
atgaagttagaatatgagttgatcgatctttgcgacggcatacaattctacatcatgatgct |
77 |
Q |
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| T |
10412117 |
atgaagttagaatatgagttgattgatctttgcgacggcatacaattctacatcatgatgct |
10412178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 10410716 - 10410778
Alignment:
| Q |
161 |
aacacatactctgagaatgaaattgtgatcgccccaaacaggaatgcagagaagtgattttgt |
223 |
Q |
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| T |
10410716 |
aacaaatactctgaggatgaaattgtgatccccccaaacaggacttcacagaagtgattttgt |
10410778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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