View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_high_19 (Length: 431)

Name: NF17861_high_19
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_high_19
NF17861_high_19
[»] chr1 (29 HSPs)
chr1 (1-424)||(5389416-5389839)
chr1 (119-424)||(41920234-41920538)
chr1 (116-424)||(31585755-31586063)
chr1 (114-424)||(30685899-30686209)
chr1 (138-424)||(46692814-46693100)
chr1 (117-417)||(20113523-20113823)
chr1 (114-417)||(24449932-24450235)
chr1 (147-419)||(24684478-24684748)
chr1 (201-416)||(7857518-7857731)
chr1 (140-419)||(24658731-24659010)
chr1 (228-419)||(46814467-46814656)
chr1 (310-424)||(5459133-5459247)
chr1 (210-419)||(32864561-32864771)
chr1 (301-413)||(27031846-27031958)
chr1 (244-398)||(9313310-9313463)
chr1 (201-398)||(38544759-38544954)
chr1 (244-393)||(34774779-34774925)
chr1 (323-407)||(17033571-17033655)
chr1 (357-419)||(27102210-27102272)
chr1 (357-417)||(19598655-19598715)
chr1 (210-261)||(10785489-10785540)
chr1 (300-392)||(4651742-4651834)
chr1 (33-115)||(5398595-5398680)
chr1 (201-258)||(50589365-50589422)
chr1 (360-399)||(27905434-27905473)
chr1 (210-272)||(6583337-6583399)
chr1 (357-407)||(15840924-15840974)
chr1 (337-398)||(6583237-6583298)
chr1 (357-393)||(30655579-30655615)
[»] chr7 (31 HSPs)
chr7 (114-424)||(38306037-38306347)
chr7 (114-424)||(47325880-47326190)
chr7 (114-419)||(3419656-3419962)
chr7 (149-424)||(5860283-5860558)
chr7 (136-416)||(10243985-10244260)
chr7 (147-419)||(3866926-3867197)
chr7 (114-424)||(37794777-37795075)
chr7 (153-419)||(25160630-25160896)
chr7 (137-418)||(33434909-33435189)
chr7 (249-415)||(41089752-41089918)
chr7 (148-419)||(34389771-34390043)
chr7 (213-419)||(35745827-35746031)
chr7 (201-407)||(6716748-6716953)
chr7 (306-419)||(6584877-6584990)
chr7 (210-419)||(8745026-8745234)
chr7 (210-407)||(42533264-42533460)
chr7 (210-375)||(44755500-44755663)
chr7 (360-424)||(44353559-44353623)
chr7 (211-407)||(16954527-16954722)
chr7 (244-407)||(1320701-1320863)
chr7 (348-407)||(13311849-13311908)
chr7 (315-405)||(3478329-3478419)
chr7 (290-407)||(24324810-24324927)
chr7 (357-416)||(12480905-12480965)
chr7 (291-407)||(16828948-16829064)
chr7 (300-392)||(38485518-38485610)
chr7 (338-396)||(9428128-9428186)
chr7 (210-407)||(11379139-11379335)
chr7 (357-395)||(9349768-9349806)
chr7 (349-407)||(47457034-47457092)
chr7 (359-419)||(46133277-46133338)
[»] chr8 (22 HSPs)
chr8 (136-424)||(9519297-9519585)
chr8 (136-424)||(34389000-34389288)
chr8 (114-424)||(24995390-24995700)
chr8 (138-424)||(32066290-32066576)
chr8 (114-424)||(37986853-37987164)
chr8 (139-419)||(36630638-36630918)
chr8 (114-290)||(31210319-31210496)
chr8 (286-417)||(31207364-31207494)
chr8 (210-407)||(10248565-10248761)
chr8 (190-419)||(15821379-15821606)
chr8 (317-424)||(16457456-16457562)
chr8 (210-416)||(17657005-17657209)
chr8 (315-424)||(12898269-12898378)
chr8 (360-424)||(20138448-20138512)
chr8 (345-424)||(41893396-41893474)
chr8 (300-419)||(30236128-30236247)
chr8 (357-419)||(15906705-15906767)
chr8 (357-419)||(32945703-32945765)
chr8 (357-387)||(33967345-33967375)
chr8 (349-387)||(40531243-40531281)
chr8 (363-407)||(3679471-3679515)
chr8 (357-393)||(12883497-12883533)
[»] chr2 (30 HSPs)
chr2 (136-424)||(39338860-39339148)
chr2 (114-424)||(10523873-10524187)
chr2 (190-419)||(7874145-7874372)
chr2 (124-382)||(17105197-17105456)
chr2 (316-415)||(387151-387250)
chr2 (301-419)||(14405162-14405279)
chr2 (228-417)||(1269373-1269562)
chr2 (208-397)||(14106546-14106734)
chr2 (349-416)||(13337285-13337352)
chr2 (210-397)||(37770663-37770849)
chr2 (357-419)||(4471942-4472004)
chr2 (357-417)||(22885135-22885195)
chr2 (357-419)||(16960001-16960063)
chr2 (357-419)||(34230220-34230282)
chr2 (360-419)||(7695985-7696044)
chr2 (357-419)||(2062908-2062970)
chr2 (357-419)||(10173578-10173640)
chr2 (357-419)||(15126410-15126472)
chr2 (210-384)||(41086823-41086994)
chr2 (357-419)||(5254275-5254337)
chr2 (139-176)||(7695869-7695906)
chr2 (359-416)||(16952386-16952443)
chr2 (359-416)||(17023051-17023108)
chr2 (359-416)||(17060357-17060414)
chr2 (359-416)||(17079190-17079247)
chr2 (299-392)||(27739936-27740029)
chr2 (357-398)||(33788653-33788694)
chr2 (357-406)||(42048229-42048278)
chr2 (337-397)||(23650384-23650444)
chr2 (359-407)||(37831024-37831072)
[»] chr4 (30 HSPs)
chr4 (114-417)||(30964217-30964520)
chr4 (116-419)||(8254805-8255108)
chr4 (116-419)||(8268223-8268526)
chr4 (136-424)||(4305523-4305811)
chr4 (246-417)||(30167566-30167736)
chr4 (210-419)||(25753045-25753253)
chr4 (227-417)||(53823423-53823612)
chr4 (208-419)||(31050662-31050871)
chr4 (225-407)||(19672989-19673169)
chr4 (210-407)||(22811172-22811367)
chr4 (227-407)||(19815236-19815415)
chr4 (244-390)||(39421042-39421187)
chr4 (244-419)||(2825691-2825864)
chr4 (357-419)||(38929846-38929908)
chr4 (357-409)||(36962626-36962677)
chr4 (346-413)||(38637238-38637305)
chr4 (357-408)||(39041285-39041336)
chr4 (323-419)||(46698784-46698881)
chr4 (358-407)||(2792286-2792335)
chr4 (346-419)||(41117967-41118040)
chr4 (360-407)||(21387216-21387263)
chr4 (368-419)||(28966897-28966948)
chr4 (360-419)||(35800511-35800570)
chr4 (357-419)||(16501750-16501812)
chr4 (357-387)||(17416541-17416571)
chr4 (366-416)||(35341341-35341391)
chr4 (357-403)||(40813797-40813843)
chr4 (357-386)||(37707388-37707417)
chr4 (367-419)||(12296204-12296256)
chr4 (337-397)||(49747526-49747586)
[»] chr5 (18 HSPs)
chr5 (114-424)||(698137-698447)
chr5 (114-419)||(18593019-18593324)
chr5 (147-419)||(34377907-34378179)
chr5 (221-419)||(29087364-29087562)
chr5 (210-419)||(13954234-13954441)
chr5 (244-398)||(7392052-7392205)
chr5 (216-416)||(8297347-8297546)
chr5 (210-407)||(7195251-7195447)
chr5 (250-398)||(33258903-33259050)
chr5 (244-419)||(14302430-14302604)
chr5 (368-419)||(22675324-22675375)
chr5 (266-397)||(25991936-25992066)
chr5 (300-395)||(31721639-31721734)
chr5 (357-403)||(21402853-21402899)
chr5 (357-419)||(27713088-27713150)
chr5 (384-417)||(7162319-7162352)
chr5 (357-398)||(39184208-39184249)
chr5 (360-416)||(26045967-26046023)
[»] chr3 (29 HSPs)
chr3 (117-419)||(20611562-20611864)
chr3 (154-424)||(2392501-2392771)
chr3 (114-424)||(34475749-34476058)
chr3 (154-417)||(2394255-2394518)
chr3 (151-419)||(19176316-19176583)
chr3 (114-351)||(47235492-47235729)
chr3 (140-424)||(45163651-45163941)
chr3 (201-415)||(23328354-23328564)
chr3 (346-424)||(17550965-17551043)
chr3 (210-407)||(25647557-25647753)
chr3 (190-419)||(40023572-40023799)
chr3 (299-419)||(9584053-9584173)
chr3 (335-415)||(43012372-43012452)
chr3 (244-407)||(14193846-14194009)
chr3 (244-419)||(37123289-37123463)
chr3 (318-419)||(45398776-45398877)
chr3 (357-419)||(1652886-1652948)
chr3 (357-419)||(47945725-47945787)
chr3 (210-398)||(14755286-14755471)
chr3 (361-419)||(33143948-33144007)
chr3 (369-424)||(47235729-47235784)
chr3 (334-424)||(31482880-31482970)
chr3 (357-419)||(39021276-39021338)
chr3 (359-407)||(30127283-30127332)
chr3 (348-407)||(5556580-5556639)
chr3 (324-407)||(14879421-14879504)
chr3 (357-407)||(823447-823497)
chr3 (221-331)||(4464024-4464132)
chr3 (358-406)||(31424256-31424304)
[»] scaffold0068 (1 HSPs)
scaffold0068 (116-419)||(35772-36075)
[»] chr6 (14 HSPs)
chr6 (150-424)||(3117304-3117579)
chr6 (115-416)||(16510304-16510597)
chr6 (210-419)||(20701803-20702011)
chr6 (208-331)||(15132611-15132732)
chr6 (199-416)||(32935342-32935558)
chr6 (210-379)||(3880623-3880791)
chr6 (357-396)||(26216042-26216081)
chr6 (357-404)||(34105432-34105479)
chr6 (357-396)||(12794133-12794173)
chr6 (339-398)||(9224042-9224101)
chr6 (360-407)||(13423488-13423535)
chr6 (357-396)||(26534742-26534781)
chr6 (362-407)||(33968625-33968670)
chr6 (363-407)||(32316393-32316437)
[»] scaffold0200 (1 HSPs)
scaffold0200 (228-419)||(19273-19464)
[»] scaffold0050 (1 HSPs)
scaffold0050 (210-404)||(36580-36773)
[»] scaffold0119 (1 HSPs)
scaffold0119 (228-417)||(42140-42329)
[»] scaffold1613 (1 HSPs)
scaffold1613 (201-398)||(1038-1233)
[»] scaffold0063 (1 HSPs)
scaffold0063 (210-407)||(58000-58196)
[»] scaffold0620 (1 HSPs)
scaffold0620 (357-404)||(3849-3896)
[»] scaffold0343 (1 HSPs)
scaffold0343 (384-419)||(5751-5786)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 5389839 - 5389416
Alignment:
Q  1 aacgaacaaccaggtgtcgacggcaagaacaccttttgggattcataaacatggtcatctttttcggattacctcttcctgcaccctcagcaagcactat 100  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389839 aacgaacaacctggtgtcggcggcgagaacaccttttgggattcataaacatggtcatctttttcggattacctcttcctgcaccctcagcaagcactat 5389740  T
Q  101 agccattcaaaatcggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttca 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5389739 agccattcaaaatcggagtttggagggtgcttgcaacgttgtgttaagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttca 5389640  T
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5389639 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctgcaatctttgtttgacttgatttgattt 5389540  T
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5389539 ttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgggagtcagttctttgac 5389440  T
Q  401 tcaagttggtttttgggctctgtg 424  Q
    ||||||| ||||||||||| ||||    
T  5389439 tcaagtttgtttttgggctttgtg 5389416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 119 - 424
Target Start/End: Original strand, 41920234 - 41920538
Alignment:
Q  119 tttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgct 218  Q
    |||| ||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41920234 tttggagggtgcgtgtcacgttgtgttgagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcgtcttacatattgtgtgct 41920333  T
Q  219 ggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggg 318  Q
     |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||    
T  41920334 agttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtact-ggg 41920432  T
Q  319 gcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 418  Q
    ||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  41920433 gcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggattttgggc 41920532  T
Q  419 tctgtg 424  Q
    | ||||    
T  41920533 tttgtg 41920538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 116 - 424
Target Start/End: Complemental strand, 31586063 - 31585755
Alignment:
Q  116 gagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgt 215  Q
    ||||||| ||||||| ||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |    
T  31586063 gagtttggagggtgcgtgtcacgttatgttgagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcgtcttacatagtgttt 31585964  T
Q  216 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 315  Q
    |||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31585963 gctgatttttggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtactg 31585864  T
Q  316 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
     ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31585863 agggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 31585764  T
Q  416 ggctctgtg 424  Q
    |||| ||||    
T  31585763 ggctttgtg 31585755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 114 - 424
Target Start/End: Complemental strand, 30686209 - 30685899
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||| | ||  |||||||||| ||||||||||||||||| ||||||||||||||||||||| | || |||||||| |||||||||||||    
T  30686209 cggagtttggagggttcgtgtcacgttgtgttgagccttttccttttgatctgtttgttgtttaaacttcgcttaccttgtctttcgtcttacatattgt 30686110  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| || ||||| ||||||||||||||||| ||||||||||||||||    
T  30686109 gtgttggttttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttgatttggtttttctctggtgtac 30686010  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
      |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||    
T  30686009 ctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcagttctttgactcaagttggcttt 30685910  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  30685909 tgggctttgtg 30685899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 138 - 424
Target Start/End: Complemental strand, 46693100 - 46692814
Alignment:
Q  138 gttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggtt 237  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||  |||||||||||||||||| |||||| |||||||| ||    
T  46693100 gttgtgttgagccttttctttttgatttgtttgttgttcaaacttcacatgccatgtcttttgtcttacatattgtgtgctagttttcggtgggccgatt 46693001  T
Q  238 catttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaa 337  Q
    ||||||||||||||||||||||||  ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||    
T  46693000 catttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaa 46692901  T
Q  338 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||||||  |||||||||  |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||    
T  46692900 tttggtgatatagtctggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaagttggtttttgggctttgtg 46692814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 117 - 417
Target Start/End: Complemental strand, 20113823 - 20113523
Alignment:
Q  117 agtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtg 216  Q
    |||||||||||||| ||  ||||| | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20113823 agtttgaagggtgcgtgtcacgttatattgaggcttttccttttgatttgtttgttgtttaaactttgcatgccatgtctttcatcttacatattgtgtg 20113724  T
Q  217 ctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgg 316  Q
    || |||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||  || |||| |||||||| ||||||| ||    
T  20113723 ctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgttagatatggtttggtttttctcgggtgtaccgg 20113624  T
Q  317 gggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    ||||||||||||||| |||||||||||| |||||||||  ||| |||||| ||||||||| ||||| ||| |||||||||| ||| ||||||||||||||    
T  20113623 gggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgggaatcagttctttaacttaagttggtttttgg 20113524  T
Q  417 g 417  Q
    |    
T  20113523 g 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 24450235 - 24449932
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    |||||||||  |||||| ||  ||| |||||| || ||| |||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||| |    
T  24450235 cggagtttggggggtgcgtgtcacgctgtgttgagtcttgtcctttggatttgtttgttatttaaacttcgcacgccatgtctttcgtcttacatattat 24450136  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||| ||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  24450135 gtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttggtttggtttttctctggtgtac 24450036  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||    
T  24450035 cgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaagtcagttctttgtcttaagttggtttt 24449936  T
Q  414 tggg 417  Q
    ||||    
T  24449935 tggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 147 - 419
Target Start/End: Complemental strand, 24684748 - 24684478
Alignment:
Q  147 agccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggct 246  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||  |||||||||||    
T  24684748 agccttttccttgtgatttgtctgttggttaaacttcgcatgccatgtctttcgtcttacatattgtgtgctggttttcggtgg-ccaattcatttggct 24684650  T
Q  247 tcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtact 346  Q
    ||||||||||||||| ||||||||||  |||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||  |||||||| | ||    
T  24684649 tcgagatcgggagtcggggtctagctgtaatctttgtttgacttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctactaatttgattct 24684551  T
Q  347 atagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    | ||||||  ||||||||||||||| |||||||||| |  |||||||||||||||| ||||||||||||||||    
T  24684550 aaagtctggtgggccgatcacttttaattcgagatcggatgtcagttctttgactctagttggtttttgggct 24684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 201 - 416
Target Start/End: Original strand, 7857518 - 7857731
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 300  Q
    ||||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||||||  | |||||| | |||| | ||||||||||||| || ||     
T  7857518 tcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaat-tatgtttgacttgatatg-ttg 7857615  T
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||  |||||  |    
T  7857616 ttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgc 7857715  T
Q  401 tcaagttggtttttgg 416  Q
    | ||||||||||||||    
T  7857716 tgaagttggtttttgg 7857731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 140 - 419
Target Start/End: Original strand, 24658731 - 24659010
Alignment:
Q  140 tgtgttcagccttttccttttgatttgtttgttgtttaaact--tcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggtt 237  Q
    |||||| |||||||||||| ||| | ||||||| |||  ||   ||||||  ||||||| || |||||||| |||||||||||  | | |||||||||||    
T  24658731 tgtgttaagccttttccttgtgactagtttgttttttggaccaatcgcatatcatgtctatcgtcttacattttgtgtgctggagtccggtgggccggtt 24658830  T
Q  238 catttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaa 337  Q
      ||| ||||| |||||||||||  | |||||||| ||||| | |||||||||||| || | || ||||||||||  |||||| |||||||||| ||| |    
T  24658831 atttttgcttcaagatcgggagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctga 24658928  T
Q  338 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||| ||| ||||||  ||||| |||||||||||||||||||| |||||||| |||||| || |||||||||||||||||    
T  24658929 tttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtcagctctttggctgaagttggtttttgggct 24659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 419
Target Start/End: Complemental strand, 46814656 - 46814467
Alignment:
Q  228 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 327  Q
    ||||||||||  ||| | |||||||||| ||||  | |||||| | ||||| | |||||||||||| || | || ||||||||||| |||||| ||||||    
T  46814656 tgggccggttatttttgattcgagatcgagagttggtgtctagttgcaatcct-gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggt 46814559  T
Q  328 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||| ||||    
T  46814558 gccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggct 46814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 310 - 424
Target Start/End: Original strand, 5459133 - 5459247
Alignment:
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||| || ||||| ||||||||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  410 tttttgggctctgtg 424  Q
    |||||||||| ||||    
T  5459233 tttttgggctttgtg 5459247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 419
Target Start/End: Complemental strand, 32864771 - 32864561
Alignment:
Q  210 ttgtgtgctggttttcag-tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 308  Q
    ||||||||| |||||| | ||||||||||  ||| ||||||| ||| |||||| | ||||||||||||||||  |||| ||| ||||| | ||| ||||     
T  32864771 ttgtgtgctagttttccggtgggccggttacttttgcttcgaaatcaggagtcggtgtctagctacaatcttgttttggctttatttggtgtttatctga 32864672  T
Q  309 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 408  Q
    | ||||| ||| |||||||||||  |  ||||||| ||| || |||  ||||| ||||||||| |||||||||| | |||| |||||||||||||||||     
T  32864671 tctactgagggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagttt 32864572  T
Q  409 gtttttgggct 419  Q
    | |||||||||    
T  32864571 ggttttgggct 32864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 413
Target Start/End: Complemental strand, 27031958 - 27031846
Alignment:
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    ||||||||||||| |||||  |||||||||| ||| ||||||| ||| |||||   ||||||||||||||||||||||||||  ||||||| |||||| |    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  401 tcaagttggtttt 413  Q
    |||||||||||||    
T  27031858 tcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 244 - 398
Target Start/End: Complemental strand, 9313463 - 9313310
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||||||||||  | |||||||| |||| |||||||| | ||||||| | ||||||| |||||  ||| | |||||||||||  || |||||||    
T  9313463 gcttcgagatcgggagttggtgtctagctgcaat-tttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggt 9313365  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
     ||| |||||   |||| ||||||||||||||||||||| |||||||||||||||    
T  9313364 cctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 38544954 - 38544759
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 299  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  38544954 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 38544857  T
Q  300 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  38544856 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 34774779 - 34774925
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    ||||||||| |||||||| | ||||| |||||||||| ||||| ||||||||||| ||||||| || ||| ||||| ||| |||||||  || |||||||    
T  34774779 gcttcgagaacgggagtcggtgtctaactacaatctt-gtttggcttgatttgatgtttctctagtatac-gggggtgagtggtgcccttctgatttggt 34774876  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagtt 393  Q
     |||  |||||  || |||||||||||||| |||||||| ||||||||||    
T  34774877 cctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtt 34774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 17033571 - 17033655
Alignment:
Q  323 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||||  || ||||||| ||||||||||  ||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 27102210 - 27102272
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | |||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggct 27102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 417
Target Start/End: Original strand, 19598655 - 19598715
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19598655 gggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 10785540 - 10785489
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtc 261  Q
    |||||||||||||| | ||||||||||| |||| ||||||||||||||||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagtc 10785489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 4651742 - 4651834
Alignment:
Q  300 tttctctggtgtactgggggcgaggggtgcccagct-aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 392  Q
    |||||||||||||| |||||  ||||||||||  || |||||| | | | ||||||  |||||||||||||||||||||||||| |||||||||    
T  4651742 tttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccga-agtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 5398680 - 5398595
Alignment:
Q  33 cttttgggattcataaacatgg---tcatctttttcg----gattacctcttcctgcaccctcagcaagcactatagccattcaaaatcg 115  Q
    |||||| ||||| |||||||||   ||||||||||||    ||||||||||||||||||||||    |||||||||||||||||||||||    
T  5398680 cttttgagattcgtaaacatggccatcatctttttcgagttgattacctcttcctgcaccctc----agcactatagccattcaaaatcg 5398595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 50589422 - 50589365
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcggga 258  Q
    |||||||||||||||||||| ||   ||||||||||| |||| |||||||||||||||    
T  50589422 tcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcggga 50589365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 399
Target Start/End: Original strand, 27905434 - 27905473
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttga 399  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  27905434 ccgatcacttttgattcgagatcagaagttagttctttga 27905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 6583399 - 6583337
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagct 272  Q
    ||||||| ||||| || |||||||||||  ||| |||||||||||||||||| | ||||||||    
T  6583399 ttgtgtgttggttgtcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagct 6583337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 15840974 - 15840924
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||    
T  15840974 gggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Complemental strand, 6583298 - 6583237
Alignment:
Q  337 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    ||||||| ||| ||||||  || ||||||||||||||||||||||| | ||||| |||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 30655579 - 30655615
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagtt 393  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  30655579 gggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 114 - 424
Target Start/End: Original strand, 38306037 - 38306347
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38306037 cggagtttggagggtgcttgcaacgttgtgttgagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 38306136  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  38306137 gtgctggttttcggtgggccggttcatttggcttcgagaacgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtac 38306236  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  38306237 agggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgggagtcagttctttgactcaagttggtttt 38306336  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  38306337 tgggctttgtg 38306347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 114 - 424
Target Start/End: Complemental strand, 47326190 - 47325880
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||| ||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  47326190 cggagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgatttgtttgttgttcaaacttcgcatgccatgtctttcttcttacatattgt 47326091  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||| ||||||||||||||||    
T  47326090 gtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcggggtctagcagcaatctttgtttaacttgatttggtttttctctggtgtac 47325991  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||  ||||||||||||||||||||||  ||||||||| ||||||||| |||||| |||||||| |||||||||||||||||||||    
T  47325990 cgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgggagtcagctctttgactcaagttggtttt 47325891  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  47325890 tgggctttgtg 47325880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 114 - 419
Target Start/End: Complemental strand, 3419962 - 3419656
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgtt-gtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattg 212  Q
    ||||||||| ||||||| ||  ||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  3419962 cggagtttggagggtgcgtgtcacgtttgtgttgagccctttccttttgatttgtttgttgtttaaacttcacatgccatgtctttcgtcttacatattg 3419863  T
Q  213 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgta 312  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||| ||    
T  3419862 tgtgctggttttcggcgagccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtata 3419763  T
Q  313 ctgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttt 412  Q
    | ||||||||||||||||| | ||||||||||||| ||| ||  |||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  3419762 ccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgggagtcagctctttgactcaagttggttt 3419663  T
Q  413 ttgggct 419  Q
    |||||||    
T  3419662 ttgggct 3419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 149 - 424
Target Start/End: Complemental strand, 5860558 - 5860283
Alignment:
Q  149 ccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttc 248  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  5860558 ccttctccttttgatttgtttgttgtttaaacttcgctcgccatgtctttcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttc 5860459  T
Q  249 gagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactat 348  Q
    |||||||||||||  |||||| || ||||||||||||| ||  ||||| |||||||||  ||||| ||||||||||||||||| ||||||||||||||||    
T  5860458 gagatcgggagtcgaggtctatctgcaatctttgtttggctgaatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactat 5860359  T
Q  349 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||| |  ||||| ||| |||||||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||    
T  5860358 agtccggtgggcctatcgcttttgattcgagatcgggagtcaattctttgacgcaagttggtttttgggctttgtg 5860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 136 - 416
Target Start/End: Original strand, 10243985 - 10244260
Alignment:
Q  136 acgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccgg 235  Q
    ||||||| || ||||||||| ||||   |||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| || ||| ||    
T  10243985 acgttgttttgagccttttcttttt---ttgtttgttgttcaaacttcgcatgccatgt-tttcgtcttacatattgtgtgctggttttcggttggctgg 10244080  T
Q  236 ttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagct 335  Q
    |||||||||||||||||||||||||| || ||||| | |||||||||||||| | |||||| |||||||||||||||| ||||| ||||||||||| |||    
T  10244081 ttcatttggcttcgagatcgggagtcgggatctagttgcaatctttgtttga-tagatttggtttttctctggtgtaccgggggagaggggtgccctgct 10244179  T
Q  336 aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||| ||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  10244180 aatttggtgctataatctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 147 - 419
Target Start/End: Original strand, 3866926 - 3867197
Alignment:
Q  147 agccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggct 246  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| | ||||| || ||  ||| |||    
T  3866926 agccttttccttttgatttatttgttgtttaaacttcacatgccacgtctttcgtcttacatattgtgtcctggttt-cggtgggtcgattacttttgct 3867024  T
Q  247 tcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtact 346  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||| ||||| || ||||||||||||||    
T  3867025 tcgagatcgagagtcggggtctagctacaatctttgtttgacttgatatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtact 3867124  T
Q  347 atagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    | | | ||  |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  3867125 aaaatatggtgggctgatcacttttgattcgagaccgggagtcagttctttgactcaagttggtttttgggct 3867197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 114 - 424
Target Start/End: Original strand, 37794777 - 37795075
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||||||||||  ||  || ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||  | ||||  | |||||||||||    
T  37794777 cggagtttgaagggtgtgtgtcacattgtgttgagcattttccttttgatttgtttgttgttcaaacttcgcatgccg-gacttttgttttacatattgt 37794875  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||           ||||||||    
T  37794876 gtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatt-----------tggtgtac 37794964  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||| |||||||||||| |||||| ||  |||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||||    
T  37794965 cgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtcaagttggtttt 37795064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 153 - 419
Target Start/End: Original strand, 25160630 - 25160896
Alignment:
Q  153 ttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgaga 252  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||| |||||  | |||||||||||| | ||    
T  25160630 ttccttttgatttgtttgttgtttaaactacgcatgccatgtcttttgtcttacatattgtgtactggttttcggtgggatgattcatttggctttggga 25160729  T
Q  253 tcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtc 352  Q
    ||||||||| |||||||| | | || ||||||||||||| |||| |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||    
T  25160730 tcgggagtcggggtctagttgctatttttgtttgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtc 25160829  T
Q  353 tgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||  || ||||| ||||||||||||||||| | |||||  ||||  | | |||||||||||||||||    
T  25160830 tggtggaccgattacttttgattcgagatcggaagtcaaatcttgaaattaagttggtttttgggct 25160896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 137 - 418
Target Start/End: Original strand, 33434909 - 33435189
Alignment:
Q  137 cgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggt 236  Q
    ||||||||  ||||||||||||| |||  ||| ||||||||||||| |||||||||||| ||| | |||||||||||||| |||||| | |||||||| |    
T  33434909 cgttgtgtcgagccttttcctttcgataggttggttgtttaaactttgcatgccatgtcattcgtattacatattgtgtgttggtttccggtgggccgat 33435008  T
Q  237 tcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagcta 336  Q
    |  ||| ||||||||||||| ||||||||||||| |  |||||||||||  ||||||||| |||| ||||||||||| ||||||||||||||||| | ||    
T  33435009 tacttttgcttcgagatcggtagtccgggtctagttgtaatctttgtttagcttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctgtta 33435107  T
Q  337 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 418  Q
    ||||||||||| ||||||  | | |||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||    
T  33435108 atttggtactaaagtctggtgagacgatcacttttgattcgagatcgggagtcagttctttgtctcaagttcgtttgtgggc 33435189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 249 - 415
Target Start/End: Complemental strand, 41089918 - 41089752
Alignment:
Q  249 gagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactat 348  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| | |||||||||||||||     
T  41089918 gagatcgagagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaa 41089819  T
Q  349 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
    ||||||  || ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 148 - 419
Target Start/End: Original strand, 34389771 - 34390043
Alignment:
Q  148 gccttttccttttgatttgtttgttgtttaaact--tcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggc 245  Q
    ||||||||||||| ||||| |||||||||  ||   ||||||  ||||||| || || |||||||||||||||||| |    |||||| |||  ||| ||    
T  34389771 gccttttccttttcatttgcttgttgtttgcaccaatcgcatatcatgtctatcgtcgtacatattgtgtgctggtgtctgatgggccagttatttttgc 34389870  T
Q  246 ttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtac 345  Q
    ||||||||| | |||  | |||||| | ||||| |  ||||||||||| ||  | ||||||||||||||||||| |||| |||||| ||| |||||||      
T  34389871 ttcgagatcagaagttggtgtctagttgcaatcatgttttgacttgatatg-gtgttctctggtgtactgggggtgaggagtgccctgctgatttggttt 34389969  T
Q  346 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    || ||||||  |||||||||||||||||||||||||| |||||||| |||||| || |||||||||||||||||    
T  34389970 taaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaagttggtttttgggct 34390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 213 - 419
Target Start/End: Complemental strand, 35746031 - 35745827
Alignment:
Q  213 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgta 312  Q
    |||| |||||||| |||| ||||||  ||| ||||||||||||| |||  | | |||||  ||||||| |||||||||||| || | || ||||| ||||    
T  35746031 tgtgttggttttcggtggaccggttacttttgcttcgagatcggaagttggtgactagcagcaatctt-gtttgacttgatatggtgtt-ctctgatgta 35745934  T
Q  313 ctgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttt 412  Q
    | |||||||||||||||||  ||||||| || ||| ||||||| |||| ||||||||||||||||||||| | |||||  |||||| |||||||||||||    
T  35745933 ccgggggcgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggttt 35745834  T
Q  413 ttgggct 419  Q
    |||||||    
T  35745833 ttgggct 35745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 201 - 407
Target Start/End: Complemental strand, 6716953 - 6716748
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 300  Q
    |||||| | ||| |||||||||||| ||||||| |||  |||  ||| ||||||||||||| | |||||||| ||||| || |||| ||||||||||| |    
T  6716953 tcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatc-ttatttggcttgatttgatgt 6716855  T
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    ||||||||||||| | | | |||||||||||  || ||||  |  || ||||||   ||||||||||||||||||||||||| ||||||||||||||| |    
T  6716854 ttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggc 6716755  T
Q  401 tcaagtt 407  Q
    |||||||    
T  6716754 tcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 6584877 - 6584990
Alignment:
Q  306 tggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 405  Q
    |||||||| || |||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| || |||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaag 6584976  T
Q  406 ttggtttttgggct 419  Q
    ||||||||||||||    
T  6584977 ttggtttttgggct 6584990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 210 - 419
Target Start/End: Original strand, 8745026 - 8745234
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||||||||| |||||||||||  ||| ||||||||||||| || | | |||||||| |||| || |||||   |||| || | ||||||||||    
T  8745026 ttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctagctgcaatgtt-gtttggtgtgatctggtgtttctctggt 8745124  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    | || | ||| |||||||| ||  || ||||||| ||| | ||||  |||||||||||||||||||||||||| ||| ||||||| |||  ||||||| |    
T  8745125 gcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttg 8745224  T
Q  410 tttttgggct 419  Q
     |||||||||    
T  8745225 gttttgggct 8745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 407
Target Start/End: Complemental strand, 42533460 - 42533264
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||||| | |  ||||||||||  ||| |||||||||||||||||| | ||| |||| || ||||  |||| |  ||| || | ||||||||||    
T  42533460 ttgtgtgctggtctccgatgggccggttacttttgcttcgagatcgggagtctgtgtccagctgcattctta-tttggcgcgatgtggtgtttctctggt 42533362  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    | |  ||||| |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||| | ||||| || |||||    
T  42533361 gcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtt 42533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 375
Target Start/End: Original strand, 44755500 - 44755663
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||||||  | |||||||  || |||| |||| ||| ||||||||| | |||||||| | || |||||||||| ||||||| | ||||||||||    
T  44755500 ttgtgtgctggttagcggtgggcccattaattttgctttgaggtcgggagtcggtgtctagctgctat-tttgtttgacgtgatttggtgtttctctggt 44755598  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgatt 375  Q
    |||| | ||  |||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||    
T  44755599 gtaccgtggt-gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 44353623 - 44353559
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| ||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 44353559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 407
Target Start/End: Original strand, 16954527 - 16954722
Alignment:
Q  211 tgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtg 310  Q
    ||||||||||||| |  ||||||| ||  ||| ||||| |||||| ||||  | |||||||| ||||||| ||| | |  |||||| | |||||||||||    
T  16954527 tgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttgg-cgcgatttggtctttctctggtg 16954625  T
Q  311 tactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||   | || |||||||||||  || ||||||| ||| ||||||   | ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  16954626 tatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 1320701 - 1320863
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||||||||||  | ||||||||  ||| |||||||| |   ||||| | |||||||| ||||  ||||| |||||||||||   | |||||||    
T  1320701 gcttcgagatcgggagttggtgtctagctgtaat-tttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggt 1320799  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
      || ||||||  |||||||||||||||||||| | ||| | ||||||||||||| ||||||||    
T  1320800 cataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 407
Target Start/End: Original strand, 13311849 - 13311908
Alignment:
Q  348 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  13311849 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 405
Target Start/End: Original strand, 3478329 - 3478419
Alignment:
Q  315 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 405  Q
    ||||| |||||||||||  ||  |||||| ||| ||| ||  |||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  3478329 gggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 407
Target Start/End: Complemental strand, 24324927 - 24324810
Alignment:
Q  290 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 389  Q
    ||||||| | ||||| |||||||| ||||   ||||||||||  || |||||||  || ||| ||  |||||||||| ||||||||||||||| ||||||    
T  24324927 tgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtc 24324828  T
Q  390 agttctttgactcaagtt 407  Q
    | ||||||| ||||||||    
T  24324827 aattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Original strand, 12480905 - 12480965
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgg 416  Q
    ||||||||| |||||||||||||||| |||||||||||||||  ||||| |||||||||||    
T  12480905 gggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 16829064 - 16828948
Alignment:
Q  291 gatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtca 390  Q
    |||||| | ||||||| |||||   |||| |||||||||||  || ||||||| ||| ||||||   ||| ||||||||||| |||||||||   |||||    
T  16829064 gatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtca 16828965  T
Q  391 gttctttgactcaagtt 407  Q
    |||||||||||||||||    
T  16828964 gttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 392
Target Start/End: Original strand, 38485518 - 38485610
Alignment:
Q  300 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 392  Q
    ||||||||||| ||||||||  ||||||||||  || | || || ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  38485518 tttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 9428186 - 9428128
Alignment:
Q  338 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctt 396  Q
    |||||| || |||||||  | |||||||||||||||||||||||||| |||||||||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttctt 9428128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 407
Target Start/End: Complemental strand, 11379335 - 11379139
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||||||| ||  |||||| |||||  ||| | ||| |||||||||||  | |||||||||||||||| ||||| ||   |  | | ||||||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctagctacaatctt-gtttggctgactacggtgtttctctggt 11379237  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    | || | |||   |||||||||  ||||||||||  | |||||||  | ||||||| |||||||||||||||| ||||||||| |||||  |||||||    
T  11379236 ggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 395
Target Start/End: Original strand, 9349768 - 9349806
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttct 395  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9349768 gggccgatcacttttgattcgagatcgggagtcaattct 9349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 47457092 - 47457034
Alignment:
Q  349 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||||| || |||||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  47457092 agtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagtt 47457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 419
Target Start/End: Complemental strand, 46133338 - 46133277
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 419  Q
    ||||||| ||||||||| |||||| |||||||||||| ||  ||||| ||||||||||||||    
T  46133338 gccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggct 46133277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 136 - 424
Target Start/End: Original strand, 9519297 - 9519585
Alignment:
Q  136 acgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccgg 235  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  9519297 acgttgtgttgagccttttcctttttatttgtttgttgtttaaacttcgcatgccatttctttcgtcttacatattgtgtgctggttttcagtaggccgg 9519396  T
Q  236 ttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagct 335  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||    
T  9519397 ttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgggggtgaggggtgccctgct 9519496  T
Q  336 aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||||||||||||||||||   |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  9519497 aatttggtactatagtctagtgggccgatcagttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 9519585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 136 - 424
Target Start/End: Complemental strand, 34389288 - 34389000
Alignment:
Q  136 acgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccgg 235  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  | ||||||    
T  34389288 acgttgtgttgagccttttccttttgatttgtttgttgtttaaacttcacatgccatgtctttcgtcttacatattgtgtgctggttttcgataggccgg 34389189  T
Q  236 ttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagct 335  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||  |||||||||||||||| |||    
T  34389188 ttcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgct 34389089  T
Q  336 aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  34389088 aatttggtactatagtctggtgggccgatcacttttgattcgagatcaagagtcagttctttgactcaagttggtttttgggctttgtg 34389000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 114 - 424
Target Start/End: Complemental strand, 24995700 - 24995390
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| | |||| |||  || ||||||| ||| ||||||||||||||| |||||||||||||||||| |||| |||| |||| |||||||||||||    
T  24995700 cggagtttggacggtggttgtcacattgtgttgagcattttccttttgatttatttgttgtttaaacttcgtatgctatgtttttcgtcttacatattgt 24995601  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  24995600 gtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtac 24995501  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
    ||||||||||||||| |  ||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24995500 tgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttt 24995401  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  24995400 tgggctttgtg 24995390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 138 - 424
Target Start/End: Complemental strand, 32066576 - 32066290
Alignment:
Q  138 gttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggtt 237  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  32066576 gttgtgttgagccttttctttttgatttgtttgttgttcaaacttcgcatgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccggtt 32066477  T
Q  238 catttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaa 337  Q
    |||||||||| |||||||||| || |||||||| | ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |||||    
T  32066476 catttggctttgagatcgggattcggggtctagttgcaatctttgtttgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaa 32066377  T
Q  338 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||| ||||||||||  |||||||||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||| ||||    
T  32066376 tttggtgctatagtctggtgggccgatcacttttgattcgaaatcgggagtcagctctttgactccagttggtttttgggctttgtg 32066290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 114 - 424
Target Start/End: Complemental strand, 37987164 - 37986853
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttc-agccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattg 212  Q
    ||||||| | ||||||| ||  ||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  37987164 cggagttaggagggtgcgtgtcacgttgtgtttgagccttttctttttgatttgtttgttgttcaaacttcgcatgccatgtctttcgtcttacatattg 37987065  T
Q  213 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgta 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| | || ||||| |||||||||||||| |||||||||||||||    
T  37987064 tgtgctggttttcggtgggccggttcatttggcttcgagatcggtagtcggggtctagttgcattctttatttgacttgatttggtttttctctggtgta 37986965  T
Q  313 ctgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttt 412  Q
    | ||||||||||||||||| |||||||||||  |||||||||  ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  37986964 ccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgggagtcagttctttgactcaagttggttt 37986865  T
Q  413 ttgggctctgtg 424  Q
    ||| ||| ||||    
T  37986864 ttgtgctttgtg 37986853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 139 - 419
Target Start/End: Original strand, 36630638 - 36630918
Alignment:
Q  139 ttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttc 238  Q
    ||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||    
T  36630638 ttgtgttgaaccttttccttgtgatttgtttgttggttaaacttcgcatgccatgtctttcgtcttacatattgtgtgttggttttcggtaggccggttc 36630737  T
Q  239 atttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaat 338  Q
    ||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||    
T  36630738 atttggcttcgagatcgggagacgaggtctagctgcaatctttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaat 36630837  T
Q  339 ttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||| ||| ||||||  ||||||||||||||| |||||||||| || |||||||||||||||| |||| |||||||||||    
T  36630838 ttggttctaaagtctggtgggccgatcacttttaattcgagatcgggtgtcagttctttgactctagtttgtttttgggct 36630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 114 - 290
Target Start/End: Complemental strand, 31210496 - 31210319
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacata-ttg 212  Q
    ||||||| | ||||||| ||  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||    
T  31210496 cggagttcggagggtgcgtgtcacgttgtgttgagccttttccttttgatttgtttgttgttcaaacttcgcatgccatgtctttcgtcttacatatttg 31210397  T
Q  213 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgactt 290  Q
    || |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||    
T  31210396 tgcgctggttttcggtgggccggttcatttggcttcaagatcgggagtcagggtctagctgcaatctttgtttgactt 31210319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 286 - 417
Target Start/End: Complemental strand, 31207494 - 31207364
Alignment:
Q  286 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 385  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  31207494 gacttgatttggtttttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 31207396  T
Q  386 agtcagttctttgactcaagttggtttttggg 417  Q
    |||||||||||||||||||||||| |||||||    
T  31207395 agtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 210 - 407
Target Start/End: Complemental strand, 10248761 - 10248565
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||| |||||| | ||||||| |||  ||| |||||||||||||||||| | |||||||| |||| |||||||| ||||||||| | ||||||||||    
T  10248761 ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcttgatttggtgtttctctggt 10248663  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||| ||||| |||||||| ||  ||||||| || ||| | | ||  || ||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  10248662 gtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 419
Target Start/End: Complemental strand, 15821606 - 15821379
Alignment:
Q  190 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 289  Q
    ||||||| || |||||||||||||||| |||| |   |||||||| ||  |||  ||| |||||||| |||  | | ||||||||||||  |||||| ||    
T  15821606 catgtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttctttgagatcggaagttggtgcctagctacaatc-ctgtttggct 15821508  T
Q  290 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 389  Q
    |||| ||  | ||||||||||||| | ||||||||||||||| ||| ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||    
T  15821507 tgatatg-gtgttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtc 15821409  T
Q  390 agttctttgactcaagttggtttttgggct 419  Q
    || ||||||||| | |||||||||||||||    
T  15821408 agctctttgacttatgttggtttttgggct 15821379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 16457562 - 16457456
Alignment:
Q  317 gggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||||||| || ||||||||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttag 16457464  T
Q  417 gctctgtg 424  Q
    ||| ||||    
T  16457463 gctttgtg 16457456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 416
Target Start/End: Complemental strand, 17657209 - 17657005
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||| |||||| |  |||||||||| |||| |||||||||||||||||| | | ||||||||||||||  |||| | ||||||| | |||||||| |    
T  17657209 ttgtgtgttggtttccgatgggccggttaattttgcttcgagatcgggagtcggtggctagctacaatctta-tttggcgtgatttggtgtttctctgat 17657111  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||| |||   |||||||||||  |||| ||||  ||| ||| ||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  17657110 gtaccgggat-gaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 17657012  T
Q  410 tttttgg 416  Q
     ||||||    
T  17657011 gttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 315 - 424
Target Start/End: Complemental strand, 12898378 - 12898269
Alignment:
Q  315 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 414  Q
    |||||||||||||||||   |||||||||| |||||||||  |  ||||||||||||||||||||||| |||||||||| | | |||||||||||||||     
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttg 12898279  T
Q  415 gggctctgtg 424  Q
    ||||| ||||    
T  12898278 gggctttgtg 12898269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 20138448 - 20138512
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| ||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtg 20138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 41893474 - 41893396
Alignment:
Q  345 ctatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||||||||||  ||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggctttgtg 41893396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 30236247 - 30236128
Alignment:
Q  300 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttga 399  Q
    ||||||||||| || |||||  ||||||||||  || |||||||  |  ||||||  ||| ||||| |||||||||||||||| |||||||||||||||     
T  30236247 tttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttgg 30236148  T
Q  400 ctcaagttggtttttgggct 419  Q
     ||||||| | |||||||||    
T  30236147 ttcaagtttggttttgggct 30236128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 15906705 - 15906767
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||| |||||||||||||| |||||||||||||||  ||||||| | |||||||||    
T  15906705 gggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 32945765 - 32945703
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||    
T  32945765 gggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggct 32945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 387
Target Start/End: Original strand, 33967345 - 33967375
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggag 387  Q
    |||||||||||||||||||||||||||||||    
T  33967345 gggccgatcacttttgattcgagatcaggag 33967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 40531243 - 40531281
Alignment:
Q  349 agtctgaagggccgatcacttttgattcgagatcaggag 387  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 3679471 - 3679515
Alignment:
Q  363 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||||||||||||||| |||||| || |||||| |||||||    
T  3679471 atcacttttgattcgagatcgggagtcggtgctttgattcaagtt 3679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 12883497 - 12883533
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagtt 393  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  12883497 gggccgatcgcttttgattcgagatcaggagttagtt 12883533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 136 - 424
Target Start/End: Complemental strand, 39339148 - 39338860
Alignment:
Q  136 acgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccgg 235  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |    
T  39339148 acgttgtgttgagccttttccttttgatttgtttattgttcaaacttcgcatgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccag 39339049  T
Q  236 ttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagct 335  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||    
T  39339048 ttcatttggcttcgagatcgggagtcggggtctagctgcaatatttgtttgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgct 39338949  T
Q  336 aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  39338948 aatttggtactatagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 39338860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 114 - 424
Target Start/End: Original strand, 10523873 - 10524187
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||| ||  |||||||||| ||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  10523873 cggagtttgtagggtgcgtgtcacgttgtgttgagccttttctttttgatttgtttgttgttcaaatttcgcatgccatgtctttcatcttacatattgt 10523972  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||||||||||| |||||||||||| |||    
T  10523973 gtgctggttttcggtggaccggttcatttggcttcgagatcgggagtcgggctctagttgcaatctttgtttgacttgatttggtttttctctggtctac 10524072  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtca----gttctttgactcaagttgg 409  Q
    |||||||||| ||||||| || |||||||| ||||||||||  |||||||||||||||||||||||||| |||||||     ||||||||||||||||||    
T  10524073 tgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaatatattctttgactcaagttgg 10524172  T
Q  410 tttttgggctctgtg 424  Q
    |||||||||| ||||    
T  10524173 tttttgggctttgtg 10524187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 190 - 419
Target Start/End: Original strand, 7874145 - 7874372
Alignment:
Q  190 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 289  Q
    ||||||| || ||||| ||||||||||||||| | | |||||||||||  ||| |||||||||||||||||  | |||||||| ||||| | | ||||||    
T  7874145 catgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct-gcttgact 7874243  T
Q  290 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 389  Q
    |||| || | || |||| |||||| | |||||| |||||||| ||| ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||    
T  7874244 tgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtc 7874342  T
Q  390 agttctttgactcaagttggtttttgggct 419  Q
    || |||||||||||||||||||||||||||    
T  7874343 agctctttgactcaagttggtttttgggct 7874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 124 - 382
Target Start/End: Original strand, 17105197 - 17105456
Alignment:
Q  124 agggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaact-tcgcatgccatgtctttcatcttacatattgtgtgctggtt 222  Q
    ||||||||||   ||||||| | |||||||||||||||||||||||| |||||  ||  || |||  |||||||||||||||||||||||||||||||||    
T  17105197 agggtgcttgtcccgttgtgatgagccttttccttttgatttgtttggtgtttgcaccatctcatatcatgtctttcatcttacatattgtgtgctggtt 17105296  T
Q  223 ttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcga 322  Q
    | | ||||| |||||  ||| |||| |||||  |||||| | |||||||| ||| | ||||||||||| ||| | | ||||| ||||||||  |||| ||    
T  17105297 tccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaa-ccttgtttgacttaattaggtgtttctttggtgtaccaggggtga 17105395  T
Q  323 ggggtgcccagctaatttggtactatagtctgaagggccgatcac-ttttgattcgagatc 382  Q
    |||||||||  || ||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  17105396 ggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatc 17105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 316 - 415
Target Start/End: Original strand, 387151 - 387250
Alignment:
Q  316 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
    |||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  387151 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 14405162 - 14405279
Alignment:
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    ||||||||||||| |||||||||||||||   | | ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| |    
T  14405162 ttctctggtgtaccgggggcgaggggtgctt-gatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc 14405260  T
Q  401 tcaagttggtttttgggct 419  Q
    |||||||||||||||||||    
T  14405261 tcaagttggtttttgggct 14405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 417
Target Start/End: Original strand, 1269373 - 1269562
Alignment:
Q  228 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 327  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  1269373 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 1269472  T
Q  328 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  1269473 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 208 - 397
Target Start/End: Complemental strand, 14106734 - 14106546
Alignment:
Q  208 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 307  Q
    ||||||||| |||||| | |||||||||||  ||| |||||||||  ||||||| | | |||||| ||||| | ||||||||||||||| | || ||||     
T  14106734 tattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcct-gtttgacttgatttggtgttcctctc 14106636  T
Q  308 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 397  Q
     |||||   ||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||| ||||| |||||||| |||||    
T  14106635 atgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctcttt 14106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 416
Target Start/End: Original strand, 13337285 - 13337352
Alignment:
Q  349 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    ||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 210 - 397
Target Start/End: Complemental strand, 37770849 - 37770663
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||| |||||||| || |||||||||||  ||| |||||||||||||||||  | |||||||  |||| |   |||| |  |||||  | ||||||||||    
T  37770849 ttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgtctagcagcaat-tcgatttggcgcgatttagtgtttctctggt 37770751  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 397  Q
    |||| | ||| |||||||||||| || ||||||| |||  || ||  ||||||||||||||||||||  |||||||||||| ||||||    
T  37770750 gtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattcttt 37770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 4471942 - 4472004
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||| | |||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  4471942 gggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggct 4472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 22885195 - 22885135
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | |||||||    
T  22885195 gggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 16960001 - 16960063
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||| ||||||||||||||||  |||||||||||||| |||||||| | |||||||||    
T  16960001 gggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggct 16960063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 34230220 - 34230282
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||| |||| ||||||||||||||||||||||||||  ||||||| | |||||||||    
T  34230220 gggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggct 34230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 7695985 - 7696044
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||| | |||||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggct 7696044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 2062908 - 2062970
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||  |||||||||||||||| |||||||| |||||| |||||||| | |||||||||    
T  2062908 gggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct 2062970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 10173640 - 10173578
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||||||||||| | ||| |||| |||| |||||||| | |||||||||    
T  10173640 gggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggct 10173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 15126472 - 15126410
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||| ||||||||||||||| |||||| |||||||| |||| ||| | |||||||||    
T  15126472 gggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggct 15126410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 384
Target Start/End: Complemental strand, 41086994 - 41086823
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||| ||||| | |||| ||| ||  ||| |||| |||||||||| || | ||| ||||||||| |||||||| | ||||||| | || |||||||    
T  41086994 ttgtgtgcaggtttccggtggaccgattacttttgctttgagatcgggaatcggtgtccagctacaat-tttgtttggcgtgatttggtgtt-ctctggt 41086897  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 384  Q
    ||||  |||| ||||| |||||  || |||||||  |||||||||  ||| | ||||||||||||||||||||||    
T  41086896 gtaccaggggtgaggg-tgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatcag 41086823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 5254275 - 5254337
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||| ||| |||||| |||||| | ||||||  ||||||||||||| |||||    
T  5254275 gggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggct 5254337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 7695869 - 7695906
Alignment:
Q  139 ttgtgttcagccttttccttttgatttgtttgttgttt 176  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  7695869 ttgtgttgagccttttccttttgatatgtttgttgttt 7695906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 16952443 - 16952386
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  16952443 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 16952386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 17023108 - 17023051
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17023108 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 17060414 - 17060357
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17060414 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17060357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Original strand, 17079190 - 17079247
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17079190 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17079247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 27739936 - 27740029
Alignment:
Q  299 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 392  Q
    |||||||||||| ||||||||  ||||||||||| ||   ||||| ||  ||||||  ||||||||| |||||||||| |||||  ||||||||    
T  27739936 ttttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagt 27740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 33788694 - 33788653
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  33788694 gggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 42048278 - 42048229
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 406  Q
    |||| ||||||||||||||||||| | |||| ||||| ||||||||||||    
T  42048278 gggctgatcacttttgattcgagaccgggagccagttttttgactcaagt 42048229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  337 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 397  Q
    ||||||| ||| ||||||  |||| |||| |||||||||||||||| ||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 37831024 - 37831072
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||||||||||||||| ||| | ||||||||  ||||||||||||    
T  37831024 gccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtt 37831072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 114 - 417
Target Start/End: Original strand, 30964217 - 30964520
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||| ||  |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  30964217 cggagtttggagggtgcgtgtcacgttgtgttgaaccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcgtcttacttattgt 30964316  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  30964317 gtgctggttttcgatgggccggttcatttggcttcgagatcggaagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtac 30964416  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  30964417 cgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgggagtccgttctttgactcaagttggtttt 30964516  T
Q  414 tggg 417  Q
    ||||    
T  30964517 tggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 116 - 419
Target Start/End: Original strand, 8254805 - 8255108
Alignment:
Q  116 gagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgt 215  Q
    ||||||||||||||| ||   | ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  8254805 gagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgattcgtttgttgtttaaactttgcatgccatgtctttcgtcttacatattgtgt 8254904  T
Q  216 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 315  Q
    | |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||| |||||||||| |||||||||||||||| |    
T  8254905 gttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccg 8255004  T
Q  316 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
    |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  8255005 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttg 8255104  T
Q  416 ggct 419  Q
    ||||    
T  8255105 ggct 8255108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 116 - 419
Target Start/End: Original strand, 8268223 - 8268526
Alignment:
Q  116 gagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgt 215  Q
    ||||||||||||||| ||   | ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  8268223 gagtttgaagggtgcgtgtcgctttgtgttgagccttttccttttgattcgtttgttgtttaaactttgcatgccatgtctttcgtcttacatattgtgt 8268322  T
Q  216 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 315  Q
    | |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||| |||||||||| |||||||||||||||| |    
T  8268323 gttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtttcacttgatttggtttttctctggtgtaccg 8268422  T
Q  316 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
    |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  8268423 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcagaagtcagttctttgactcaagttggtttttg 8268522  T
Q  416 ggct 419  Q
    ||||    
T  8268523 ggct 8268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 136 - 424
Target Start/End: Original strand, 4305523 - 4305811
Alignment:
Q  136 acgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccgg 235  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||| |||||||||    
T  4305523 acgttgtgttgagccttttcctttagttttgtttgttgtttaaacttcgcttgccatgtcttttgtcttacatattgtgtactggttttcggtgggccgg 4305622  T
Q  236 ttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagct 335  Q
    |||||||||||||||||||||||||| ||| |||| | |||||||||||||||| |||||  |||||||||||||||| |||||| || ||||||| |||    
T  4305623 ttcatttggcttcgagatcgggagtcgggggctagttgcaatctttgtttgactggatttcgtttttctctggtgtaccgggggcaagcggtgccctgct 4305722  T
Q  336 aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||| ||||    
T  4305723 aatttggtactatagtctggtggggcgatcacttttgattcgagatcgggagttagttctttgtctcaagttggtttttaggctttgtg 4305811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 246 - 417
Target Start/End: Complemental strand, 30167736 - 30167566
Alignment:
Q  246 ttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtac 345  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||   |||||| || ||| |  |||| ||||||||||| ||  ||||||||     
T  30167736 ttcgagatcgggagtcggggtctagctacaatctttgtttgatttgatttaggttttctttgatgtgc-cggggtgaggggtgccctgcctatttggtat 30167638  T
Q  346 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    |||||||    ||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  30167637 tatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 210 - 419
Target Start/End: Original strand, 25753045 - 25753253
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||| ||||||||| |  ||||| | || |||| |||||||||||||||||| | |||||||| ||||||| ||||| | |||| || | ||||||||||    
T  25753045 ttgtttgctggtttccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatctt-gtttggcgtgatgtggtgtttctctggt 25753143  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||| || || |||| ||||||  || ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  25753144 gtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 25753243  T
Q  410 tttttgggct 419  Q
     |||||||||    
T  25753244 attttgggct 25753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 417
Target Start/End: Complemental strand, 53823612 - 53823423
Alignment:
Q  227 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 326  Q
    |||||||||||  ||| |||||||||||||||||| | ||||| || ||||||| | ||| ||||| ||| | |||||||||||||| || || ||||||    
T  53823612 gtgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatctt-gcttggcttgacttggtgtttctctggtgtaccggaggtgagggg 53823514  T
Q  327 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    |||||  || |||||||  || ||||||  || || |||||||||||||||||||| ||||||||||||||| |||||||| | |||||||    
T  53823513 tgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 419
Target Start/End: Complemental strand, 31050871 - 31050662
Alignment:
Q  208 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 307  Q
    |||| |||| |||||| | |||||||||||  ||| ||||||||| |||||||| | | |||||| ||||| | |||||||||||| || | || || ||    
T  31050871 tattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcct-gtttgacttgatatggtgtt-ctttg 31050774  T
Q  308 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
     ||||| |||||||||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||| || ||||||  |  ||||    
T  31050773 atgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagtt 31050674  T
Q  408 ggtttttgggct 419  Q
    ||||||||||||    
T  31050673 ggtttttgggct 31050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 225 - 407
Target Start/End: Original strand, 19672989 - 19673169
Alignment:
Q  225 cagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagg 324  Q
    |||||||||||||  ||| |||||||||||||||||| | |||||||| ||||| ||||||| |||||| |||| ||||||||||  |  ||||| ||||    
T  19672989 cagtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatc-ttgtttggcttgatatgatatttctctggttgatcgggggtgagg 19673087  T
Q  325 ggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||  ||  |||||| ||| ||||||  || ||  || ||||| |||||||||||||||||||||||||| ||||||||    
T  19673088 ggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtt 19673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 210 - 407
Target Start/End: Complemental strand, 22811367 - 22811172
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||||||||| ||||| |||||  ||| ||||||||||||| | |  | |||||| | |||| ||||||||   ||||||| | ||||||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaat-tttgtttggtgtgatttggtgtttctctggt 22811269  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||| | |||| |||| ||||||  || |||||||  || ||||||  |||||||||| |||| |||||||||| ||||||||||||||| ||||||||    
T  22811268 gta-tcggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 407
Target Start/End: Complemental strand, 19815415 - 19815236
Alignment:
Q  227 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 326  Q
    ||||||| |||  ||| |||||||||||| ||||| | |||||||| ||||||| ||||| |||||| |  | ||| ||||||  || ||||| ||||||    
T  19815415 gtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatctt-gtttggcttgatattgtatttttctggttgaccgggggtgagggg 19815317  T
Q  327 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||  ||  |||||| ||| ||||||  || ||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  19815316 tgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtt 19815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 244 - 390
Target Start/End: Complemental strand, 39421187 - 39421042
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    ||||||||||||||| || | |||||||| ||||||| ||||| | ||||||| | |||||||  ||||||| ||| |||||||||||  || || ||||    
T  39421187 gcttcgagatcgggaatcggtgtctagctgcaatctt-gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggt 39421089  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtca 390  Q
      ||||| |||  |||||||||||||||||||||||||| |||||||    
T  39421088 cttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 419
Target Start/End: Original strand, 2825691 - 2825864
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||| | ||||  | |||||||| ||||| | |||||||||||| || | || ||||||||||| | ||||||||||||| | ||| |||||||    
T  2825691 gcttcgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggt 2825788  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
     ||| |||| |  |||||||||| ||||||||||||||| ||| |||  |||||| |||||  |||||||||||||    
T  2825789 tctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggct 2825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 38929846 - 38929908
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||    
T  38929846 gggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggct 38929908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 36962677 - 36962626
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  36962677 gggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 38637305 - 38637238
Alignment:
Q  346 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
    |||||||||  |||||||||||||||||||||||||| ||||||| ||||||| || |||| ||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 39041336 - 39041285
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 408  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  39041336 gggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 419
Target Start/End: Complemental strand, 46698881 - 46698784
Alignment:
Q  323 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 419  Q
    |||||||||  || ||||||| || |||||||  ||||||||  |||||||||||||||| |||||||||||||||  ||||| || |||||||||||    
T  46698881 ggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggct 46698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 2792335 - 2792286
Alignment:
Q  358 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 41118040 - 41117967
Alignment:
Q  346 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||| ||||  ||||||||||||||||||||| | ||| ||||||||| ||||| || | |||||||||    
T  41118040 tatagtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggct 41117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 21387263 - 21387216
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||||||||||||||||||||| | ||||||||||| || |||||||    
T  21387263 ccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 28966897 - 28966948
Alignment:
Q  368 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||  ||||||||||||||| |||||||| | |||||||||    
T  28966897 ttttgattcgagattgggagtcagttctttggctcaagtttggttttgggct 28966948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Original strand, 35800511 - 35800570
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||| |||||||||||||||| | |||||||||||||| || |||| | |||||||||    
T  35800511 ccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggct 35800570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 16501750 - 16501812
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||| |||||||||||||||| |||||||| ||||||  || |||| | |||||||||    
T  16501750 gggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggct 16501812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 17416571 - 17416541
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggag 387  Q
    |||||||||||||||||||||||||||||||    
T  17416571 gggccgatcacttttgattcgagatcaggag 17416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 416
Target Start/End: Complemental strand, 35341391 - 35341341
Alignment:
Q  366 acttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    ||||||||| ||||||| | |||||| |||||| |||||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 40813843 - 40813797
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 403  Q
    |||||||||||||||||||||||||| |||| || || |||||||||    
T  40813843 gggccgatcacttttgattcgagatcgggagccaattttttgactca 40813797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 386
Target Start/End: Complemental strand, 37707417 - 37707388
Alignment:
Q  357 gggccgatcacttttgattcgagatcagga 386  Q
    ||||||||||||||||||||||||||||||    
T  37707417 gggccgatcacttttgattcgagatcagga 37707388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Original strand, 12296204 - 12296256
Alignment:
Q  367 cttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||  |||||||||||||  ||||||| | |||||||||    
T  12296204 cttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggct 12296256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 49747526 - 49747586
Alignment:
Q  337 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 397  Q
    ||||||| ||| ||||||  | ||||||||||||||||| ||||||  |||||||||||||    
T  49747526 atttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 114 - 424
Target Start/End: Original strand, 698137 - 698447
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||  ||  ||||| |||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  698137 cggagtttggagggtgtgtgtcacgttatgttgagccttttctttttgatatgtttgttgttcaaacttcgcatgccatgtctttcgtcttacatattgt 698236  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||||    
T  698237 gtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtttgacttgatttggtttttctctggtgtac 698336  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||| ||||||||||| ||||||||||  || |||||| |||||||||||||||| |||||||  |||||||||||||||||||||    
T  698337 cgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgggagtcaactctttgactcaagttggtttt 698436  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  698437 tgggctttgtg 698447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 114 - 419
Target Start/End: Original strand, 18593019 - 18593324
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||| ||  ||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||    
T  18593019 cggagtttggagggtgcatgtcacgttatgttgagccttttctttttgatttgtttgttgttcaaacttcgcatgccatgtctttcgttttacatattgt 18593118  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| ||||||||| ||||||    
T  18593119 gtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtttgacttgatttggtttttctctcgtgtac 18593218  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||| ||||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  18593219 cgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgggagttagttctttgactcaagttggtttt 18593318  T
Q  414 tgggct 419  Q
    ||||||    
T  18593319 tgggct 18593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 147 - 419
Target Start/End: Original strand, 34377907 - 34378179
Alignment:
Q  147 agccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggct 246  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||||| || |||||||||||||||||    
T  34377907 agccttttccttttgattcgtttgttgtttaaacttcgtatgccatatctttcgtcttatatatcgtgtgctggttttcggtaggccggttcatttggct 34378006  T
Q  247 tcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtact 346  Q
    |||||||||||||||  ||||||||| |||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||| ||||||||||||||    
T  34378007 tcgagatcgggagtcgaggtctagctgcaatctttgtttgacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtact 34378106  T
Q  347 atagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    | ||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  34378107 aaagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgacacaagttggtttttgggct 34378179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 221 - 419
Target Start/End: Original strand, 29087364 - 29087562
Alignment:
Q  221 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 320  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||| |  ||||||| ||||| ||||||    
T  29087364 ttttcggtgggccggttcatttggcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggc 29087463  T
Q  321 gaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||| | |||| |||||| ||| ||||||  || | |||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  29087464 gaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggct 29087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 419
Target Start/End: Complemental strand, 13954441 - 13954234
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||| ||||||||||| |||||||||||  ||| |||||||||||  ||||| | |||||||| |||||||  |||||||||||||  | ||||||||||    
T  13954441 ttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatctta-tttgacttgattttgtgtttctctggt 13954343  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||| |  || ||||||||||   || ||||||| ||| ||||||  |||||||||||||||||||||||||| ||||||| | ||||| |||||||| |    
T  13954342 gtaccgaaggtgaggggtgcctt-ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttg 13954244  T
Q  410 tttttgggct 419  Q
     |||||||||    
T  13954243 gttttgggct 13954234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 398
Target Start/End: Complemental strand, 7392205 - 7392052
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||||||||||  | |||||||| ||||||| ||||| ||||||||| | |||||||| ||||| | ||| |||||||||||  || |||||||    
T  7392205 gcttcgagatcgggagttggtgtctagctgcaatctt-gtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggt 7392107  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
     ||| ||||||  || ||||||||||||||||||||||| |||||||||||||||    
T  7392106 cctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 416
Target Start/End: Original strand, 8297347 - 8297546
Alignment:
Q  216 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 315  Q
    ||||||||||||||||||| ||  ||| |||||||||||| ||||  | |||||||| |||| |||||||  ||||||||| | ||||||| |||||| |    
T  8297347 gctggttttcagtgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaat-tttgttttgcttgatttggtgtttctctagtgtaccg 8297445  T
Q  316 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
     ||| |||||||||||  || ||||||| ||| ||  ||  ||||  || | ||||||||||||||| ||||||||||||||| |||||||| | |||||    
T  8297446 agggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtttggttttg 8297545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 407
Target Start/End: Complemental strand, 7195447 - 7195251
Alignment:
Q  210 ttgtgtgctggttttc-agtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 308  Q
    ||||||| |||||||| |||||||| |||  ||| |||||||||||||||||| | | |||||| |||| || ||||| | ||||||  | |||||||||    
T  7195447 ttgtgtgttggttttccagtgggccagttacttttgcttcgagatcgggagtcggtggctagctgcaatatt-gtttggcgtgatttagtgtttctctgg 7195349  T
Q  309 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||  |||  |||||||||||  || ||||||   || ||||||  | |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  7195348 tgtaccagggt-gaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 250 - 398
Target Start/End: Complemental strand, 33259050 - 33258903
Alignment:
Q  250 agatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactata 349  Q
    |||||||||||| |  ||||||||||||||| ||||| |  |||||| | |||||||||||||| |  || |||||||| ||  ||  |||||| ||| |    
T  33259050 agatcgggagtcggtatctagctacaatctt-gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaa 33258952  T
Q  350 gtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 419
Target Start/End: Complemental strand, 14302604 - 14302430
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||||||||||||| |||||||| ||| ||  ||||| | |||| || | |||||||||||||  | ||| ||||| |||||  ||  ||||||    
T  14302604 gcttcgagatcgggagtccgtgtctagctgcaagcta-gtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggt 14302506  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
     ||| ||||||  || | ||||||||||| ||||||||  |||||||||||||||   |||||| | |||||||||    
T  14302505 cctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttggttttgggct 14302430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 419
Target Start/End: Complemental strand, 22675375 - 22675324
Alignment:
Q  368 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||| ||||||||||||||| |||||||| | |||||||||    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggct 22675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 397
Target Start/End: Original strand, 25991936 - 25992066
Alignment:
Q  266 tctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatc 365  Q
    ||||||| ||||||| |||||||  |||||||| ||| |||||||||| |  |  |||| ||||||  ||| |||||| ||| ||||||  ||||| |||    
T  25991936 tctagctgcaatctt-gtttgacacgatttgatgtttttctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatc 25992034  T
Q  366 acttttgattcgagatcaggagtcagttcttt 397  Q
     ||||||||||||||||  |||||||||||||    
T  25992035 gcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 31721639 - 31721734
Alignment:
Q  300 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttct 395  Q
    ||||||||||| || |||||  ||||||||||  || || |||| ||  ||||| | ||||||||| |||||||||||||||| ||||||||||||    
T  31721639 tttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttct 31721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 21402899 - 21402853
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 403  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  21402899 gggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 27713088 - 27713150
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| |||||||| | |||||||||    
T  27713088 gggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggct 27713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 417
Target Start/End: Complemental strand, 7162352 - 7162319
Alignment:
Q  384 ggagtcagttctttgactcaagttggtttttggg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  7162352 ggagtcagttctttgactcaagttggtttttggg 7162319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 398
Target Start/End: Complemental strand, 39184249 - 39184208
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  39184249 gggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 26046023 - 26045967
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    ||||||||||||||||||||||| ||||| |||  |||| |||||||| | ||||||    
T  26046023 ccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttgg 26045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 117 - 419
Target Start/End: Original strand, 20611562 - 20611864
Alignment:
Q  117 agtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtg 216  Q
    |||||| ||||||| ||  |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  20611562 agtttggagggtgcgtgtcacgttgtgttgagccttttccttttgatttgtttattgttcaaacttcgcatgctatgtttttcgtcttacatattgtgtg 20611661  T
Q  217 ctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgg 316  Q
    ||||||||| ||||| |||||||||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||    
T  20611662 ctggttttcggtgggtcggttcatttggtttcgagatcaggagtcggggtctagctgcaatctttgtttgacttgatttggtttttctctggtgtaccgg 20611761  T
Q  317 gggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 416  Q
    ||||||||||||||| |||||||| |||||||||| ||  |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  20611762 gggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgggagtcagttctttgacttaagttggtttttgg 20611861  T
Q  417 gct 419  Q
    |||    
T  20611862 gct 20611864  T

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Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 154 - 424
Target Start/End: Complemental strand, 2392771 - 2392501
Alignment:
Q  154 tccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagat 253  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  2392771 tccttttgatttgtttgttatttaaacttcgcacgccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagat 2392672  T
Q  254 cgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtct 353  Q
    |||||||| |||||||||| |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||    
T  2392671 cgggagtcggggtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcct 2392572  T
Q  354 gaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |  || ||||||||||||||||||||||  | ||||||||||||| || ||||||||||||||||| ||||    
T  2392571 ggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttgggctttgtg 2392501  T

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Target: chr3; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 114 - 424
Target Start/End: Complemental strand, 34476058 - 34475749
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||  ||  ||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||  |||||||||| ||    
T  34476058 cggagtttggagggtgggtgtcacgttgt-ttgagccttttcctttggatttgtttgttgtttaaacttcgcatgccttgtcttttgtcttacatatcgt 34475960  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  34475959 gtgctggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtttgacttggtttgatttttctctggtgtac 34475860  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 413  Q
     ||||||||||||||||| ||||||||| | ||||||||||  |||||||||||||||||||||||||| |||||||  |||| || | |||||| ||||    
T  34475859 cgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgggagtcaaatcttggaattaagttgatttt 34475760  T
Q  414 tgggctctgtg 424  Q
    |||||| ||||    
T  34475759 tgggctttgtg 34475749  T

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Target: chr3; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 154 - 417
Target Start/End: Complemental strand, 2394518 - 2394255
Alignment:
Q  154 tccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagat 253  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  2394518 tccttttgatttgtttgttatttaaacttcgcacgccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagat 2394419  T
Q  254 cgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtct 353  Q
    |||||||| |||||||||| |||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||    
T  2394418 cgggagtcggggtctagctgcaatctttgtttgacttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcct 2394319  T
Q  354 gaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    |  || ||||||||||||||||||||||  | ||||||||||||| || |||||||||||||||    
T  2394318 ggtggaccgatcacttttgattcgagattggaagtcagttctttgtcttaagttggtttttggg 2394255  T

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Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 151 - 419
Target Start/End: Original strand, 19176316 - 19176583
Alignment:
Q  151 ttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcga 250  Q
    |||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| |||||||||||    
T  19176316 ttttccttgtgatttgtttgttggttaaacttcacatgccatgtctttcctcttacttattgtgtgctggttttcggtgggctggttcctttggcttcga 19176415  T
Q  251 gatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatag 350  Q
    |||| |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| ||||| ||| | || |||||||| ||||||||||| ||| ||    
T  19176416 gatcaggagtcggggtctagctgcaatctttgtttgacttaatttggtttttctctgatgtaccgggagtga-gggtgccctgctaatttggttctaaag 19176514  T
Q  351 tctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19176515 tctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggct 19176583  T

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Target: chr3; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 114 - 351
Target Start/End: Original strand, 47235492 - 47235729
Alignment:
Q  114 cggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgt 213  Q
    ||||||||| ||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||    
T  47235492 cggagtttggagggtgcgtgtcacgttgtgttgagccttttccttttgatttgtttgttgtttaaacttcgcacgccatgtctttcgtcttacataatgt 47235591  T
Q  214 gtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtac 313  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||||  ||||||    
T  47235592 gtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcagggtctagctgcaatctttgtttgacttggtttggtttttctccagtgtac 47235691  T
Q  314 tgggggcgaggggtgcccagctaatttggtactatagt 351  Q
     ||||||||||||||||| |||||||||| ||||||||    
T  47235692 cgggggcgaggggtgccctgctaatttgggactatagt 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 140 - 424
Target Start/End: Original strand, 45163651 - 45163941
Alignment:
Q  140 tgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttca 239  Q
    |||||| || ||| ||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||   | ||||||||||    
T  45163651 tgtgttgagtcttgtcctttttatttgtttgttatttaaacttcgcacgccatgtctttcgtcttacatattgtgtgctggtttttgataggccggttca 45163750  T
Q  240 tttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg----tgtactgggggcgaggggtgcccagct 335  Q
    ||||||||| ||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||| |    ||||| | ||||||||||||||| |||    
T  45163751 tttggcttcaagatcggaagtcggggtctagctgcaatctttgtttgacttggtttgatttttctctagtgcatgtaccgagggcgaggggtgccctgct 45163850  T
Q  336 aatttggtactatagtct--gaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||||||||||||||||||     |||||||||||||||||||||||||||| |||||||| |||| || ||||||||||||||||| ||||    
T  45163851 aatttggtactatagtcttgtgtgggccgatcacttttgattcgagatcagaagtcagttttttgtcttaagttggtttttgggctttgtg 45163941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 201 - 415
Target Start/End: Complemental strand, 23328564 - 23328354
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 300  Q
    ||||||||||||||||||||| | |  ||||||||||  ||| |||||||||||||||||  | |||||||| |||| ||||||||||||||| || | |    
T  23328564 tcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaat-tttgtttgacttgatatggtgt 23328468  T
Q  301 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 400  Q
    | ||||||||||| ||||||||||||||||| | | ||||||| ||| ||| ||  || ||||||||||||||||||||||| ||||| || | |||| |    
T  23328467 t-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggc 23328369  T
Q  401 tcaagttggtttttg 415  Q
    |||||||||||||||    
T  23328368 tcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 346 - 424
Target Start/End: Original strand, 17550965 - 17551043
Alignment:
Q  346 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 17551043  T

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Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 407
Target Start/End: Original strand, 25647557 - 25647753
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||| |||||| |  ||||||||||  ||| ||||||||| |||||||| | |||||||| |||| | |||||| | ||||||| | ||||||||||    
T  25647557 ttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtctagctgcaat-tctgtttggcgtgatttggtgtttctctggt 25647655  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||| ||| | || ||||||||  || ||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||  |||||||| || |||||    
T  25647656 gtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

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Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 419
Target Start/End: Complemental strand, 40023799 - 40023572
Alignment:
Q  190 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 289  Q
    ||||||| || |||||||||||||||  |||| | | |||| ||||||  ||| ||||||||||||| |||  | |||||||| ||||| |  |||||||    
T  40023799 catgtctatcgtcttacatattgtgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgact 40023700  T
Q  290 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 389  Q
    |||| || | || |||| |||||| ||||||||||| ||||| ||| |||| ||  || ||||||  || ||||||||||||||||||||||| ||||||    
T  40023699 tgatatggtgtt-ctctagtgtaccgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T
Q  390 agttctttgactcaagttggtttttgggct 419  Q
      ||||||| || |||||||||||||||||    
T  40023601 gattctttggcttaagttggtttttgggct 40023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 419
Target Start/End: Complemental strand, 9584173 - 9584053
Alignment:
Q  299 ttttctctggtgtactgggggcgag-gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 397  Q
    |||||||| |||||| ||||| ||| |||||||| ||||||||| ||||| ||||||  ||  |||||||||||||||||||||| ||||||||||||||    
T  9584173 ttttctcttgtgtaccggggg-gagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttcttt 9584075  T
Q  398 gactcaagttggtttttgggct 419  Q
    | |||||| |||||||||||||    
T  9584074 gtctcaagatggtttttgggct 9584053  T

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Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  335 taatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 415  Q
    ||||||||| ||| ||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 407
Target Start/End: Original strand, 14193846 - 14194009
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt-ttctctggtgtactgggggcgaggggtgcccagctaatttgg 342  Q
    ||||||| |||||||||| | ||||||||||||| | || ||| | ||||||| | | |||| |||||||| ||| | |||||||||||  || ||||||    
T  14193846 gcttcgatatcgggagtcggtgtctagctacaat-tctgcttggcgtgatttggtgtgttctttggtgtaccgggagtgaggggtgcccttctgatttgg 14193944  T
Q  343 tactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    | ||| ||||||  || ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  14193945 tcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

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Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 419
Target Start/End: Original strand, 37123289 - 37123463
Alignment:
Q  244 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 343  Q
    |||||||||||||||||| | |||||||| |||| |||||||| | ||||||| | |||||||| ||||| |  || |||||||||||   |  ||||||    
T  37123289 gcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggt 37123387  T
Q  344 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
     ||| | | ||  |||||||||||||||||||||||||  |||||||||||||||  |||| || | |||||||||    
T  37123388 cctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggct 37123463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 45398776 - 45398877
Alignment:
Q  318 ggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    |||||||||||||| ||| ||||||   || ||||||  || |||||||||||||||||||||||  ||||||| ||||||| | |||||||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  418 ct 419  Q
    ||    
T  45398876 ct 45398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 1652948 - 1652886
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||| | |||||||||    
T  1652948 gggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggct 1652886  T

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Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 419
Target Start/End: Original strand, 47945725 - 47945787
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||| | |||||||||    
T  47945725 gggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggct 47945787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 398
Target Start/End: Complemental strand, 14755471 - 14755286
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||| ||| |  ||||||||||  ||| |||||||||||||||||| |  ||||||| ||||||| ||||  |  | |||| | ||||||||||    
T  14755471 ttgtgtgctgatttccgatgggccggttacttttgcttcgagatcgggagtcggtatctagctgcaatctt-gtttcgcgcgttttggtgtttctctggt 14755373  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    |||| |  || |||||||||||   |  ||| || ||| ||||||  |||||||||||||||||||| ||||| |||||||||||||||    
T  14755372 gtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 33144007 - 33143948
Alignment:
Q  361 cgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 419  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| || |||||||||||    
T  33144007 cgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggct 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 424
Target Start/End: Original strand, 47235729 - 47235784
Alignment:
Q  369 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggctttgtg 47235784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 31482880 - 31482970
Alignment:
Q  334 ctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    |||||||||| ||||||||||  |||| ||||||||||||||||||||| ||| |||  ||||  | | |||||| |||||||||| ||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaaaattaagttgatttttgggctttgtg 31482970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 39021338 - 39021276
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||||||||||||||||||||| || |||||||||||||||  ||||||  | |||||||||    
T  39021338 gggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggct 39021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 30127283 - 30127332
Alignment:
Q  359 gccgatcacttttgattcgagatcaggagtcagttct-ttgactcaagtt 407  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  30127283 gccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 407
Target Start/End: Original strand, 5556580 - 5556639
Alignment:
Q  348 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||  ||| ||||| |||||||||||||||| |||||||||||||||  |||||||    
T  5556580 tagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 407
Target Start/End: Original strand, 14879421 - 14879504
Alignment:
Q  324 gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||||||  || ||| ||| ||| ||||||  |||||||||||||||||||||||||| |||||| |||| |||  |||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagtt 14879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 823497 - 823447
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||||||||||||||||||||||||  ||||||||| ||| | |||||||    
T  823497 gggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagtt 823447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 331
Target Start/End: Complemental strand, 4464132 - 4464024
Alignment:
Q  221 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 320  Q
    ||||| |||||||||||  ||| |||||||||||||||||| | |||||| | ||||| |||| || | ||||||| | ||||||| |||||| | |||     
T  4464132 ttttcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatc-ttgtgtggcgtgatttggtgtttctct-gtgtaccgagggt 4464035  T
Q  321 gaggggtgccc 331  Q
    |||||||||||    
T  4464034 gaggggtgccc 4464024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 31424256 - 31424304
Alignment:
Q  358 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 406  Q
    ||||| || |||||||||||||||| ||||||||| |||||| ||||||    
T  31424256 ggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 116 - 419
Target Start/End: Complemental strand, 36075 - 35772
Alignment:
Q  116 gagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgt 215  Q
    ||||||||||||||  ||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36075 gagtttgaagggtgagtgtcacgttgtgttgagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcgtcttacatattgtgt 35976  T
Q  216 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttga-tttgatttttctctggtgtact 314  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||| | |||| ||||||||||||||||     
T  35975 gctggctttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtttgacttaattttggtttttctctggtgtacc 35876  T
Q  315 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 414  Q
    |||||||||||||||| ||||||||||||  ||||||||   |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  35875 gggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcgggagtca-ttctttgacttaagttggttttt 35777  T
Q  415 gggct 419  Q
    |||||    
T  35776 gggct 35772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 150 - 424
Target Start/End: Original strand, 3117304 - 3117579
Alignment:
Q  150 cttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcg 249  Q
    ||||| ||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3117304 ctttttctttttatttgtttgttgttcaatctttgcatgccatgtctttcatcttacatattgtgtgttggttttcagtgggccggttcatttggcttcg 3117403  T
Q  250 agatcgggagtccgggtctagctacaatctttg-tttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactat 348  Q
    |||| ||||||| |||||||| | ||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||| |  |||    
T  3117404 agattgggagtcggggtctagttgcaatctttgttttgacttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatat 3117503  T
Q  349 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtg 424  Q
    ||| ||  |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  3117504 agtatggtgggccgatcacttttgattcaagatcgggagtcagttctttgactcaagttggtttttgggctttgtg 3117579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 115 - 416
Target Start/End: Complemental strand, 16510597 - 16510304
Alignment:
Q  115 ggagtttgaagggtgcttgcaacgttgtgttcagccttttccttttgatttgtttgttgtttaaacttcgcatgccatgtctttcatcttacatattgtg 214  Q
    |||||||| ||||||| ||   ||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||| ||      
T  16510597 ggagtttggagggtgcgtgttccgttgtgttgagccttttccttttgatttgtttgttgtttta-cttcgcatgccatgtcttttgtcttacataatg-- 16510501  T
Q  215 tgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtact 314  Q
         ||||||  ||||||||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||||||||||||||     
T  16510500 -----gttttcgttgggccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtacc 16510406  T
Q  315 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 414  Q
    | |||| |||||||||| ||||||||||| ||| |||||   |||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  16510405 gagggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggttttt 16510306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 210 - 419
Target Start/End: Complemental strand, 20702011 - 20701803
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||| |||||| |  ||||||||||  ||| |||| |||||||||| || | |||||||| |||  |||||||| | ||||||| ||||||||||||    
T  20702011 ttgtgtgatggtttccgatgggccggttacttttgctttgagatcgggattcggtgtctagctgcaaa-tttgtttggcgtgatttggtttttctctggt 20701913  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 409  Q
    |||| ||||| |||||||||||  || |||||||  | ||| |||  | |||||||||||||||||||||||| ||||| ||||||||| || ||||| |    
T  20701912 gtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttg 20701813  T
Q  410 tttttgggct 419  Q
     |||||||||    
T  20701812 gttttgggct 20701803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 331
Target Start/End: Complemental strand, 15132732 - 15132611
Alignment:
Q  208 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 307  Q
    ||||||||| |||||||| |||||||||||  ||| |||||||||||||||||| | | |||||| |||||  ||||||||||||| ||  | |||||||    
T  15132732 tattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatc-ctgtttgacttgatatg-gtgttctctg 15132635  T
Q  308 gtgtactgggggcgaggggtgccc 331  Q
     |||||||||||||||||||||||    
T  15132634 atgtactgggggcgaggggtgccc 15132611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 416
Target Start/End: Complemental strand, 32935558 - 32935342
Alignment:
Q  199 catcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgat 298  Q
    |||||||||||||||||||||| || | ||||| |||||  ||| |||| |||||| | |||  | |||||||| |||||||  |||| |||| | || |    
T  32935558 catcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatcttc-tttggcttgttatggt 32935460  T
Q  299 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
     ||||| || || |  ||||| ||||||| |||  || ||||||| ||  ||||||  ||||||||| |||||||||||||||| ||||||||||||| |    
T  32935459 gtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttgg 32935360  T
Q  399 actcaagttggtttttgg 416  Q
    ||||||||| | ||||||    
T  32935359 actcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 379
Target Start/End: Complemental strand, 3880791 - 3880623
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||| ||||||||| | ||||||| |||  ||| |||| ||||||||||||| | |||||||| | ||||| ||||| | ||||||| | ||||||||||    
T  3880791 ttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctagctgctatctt-gtttggcatgatttggtgtttctctggt 3880693  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgag 379  Q
     ||| | ||| ||| |||||||  || ||||||| ||| ||| ||  |||||||||||||||||||||||    
T  3880692 ttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 26216081 - 26216042
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctt 396  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  26216081 gggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 34105432 - 34105479
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 404  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||    
T  34105432 gggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 12794133 - 12794173
Alignment:
Q  357 gggccgatca-cttttgattcgagatcaggagtcagttctt 396  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12794133 gggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 9224042 - 9224101
Alignment:
Q  339 ttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    ||||| ||| ||||||  |||| |||| |||||||||||||||| |||||||||||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 13423488 - 13423535
Alignment:
Q  360 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  13423488 ccgatcacttttgattcgagatcgagagtcggttctttggctcaagtt 13423535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 26534781 - 26534742
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctt 396  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  26534781 gggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 33968670 - 33968625
Alignment:
Q  362 gatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||| |||||||||||||||| |||||||||||||||  |||||||    
T  33968670 gatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 33968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 32316393 - 32316437
Alignment:
Q  363 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||    
T  32316393 atcacttttgattcgagatcggtagtaagttctttgattcaagtt 32316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 228 - 419
Target Start/End: Original strand, 19273 - 19464
Alignment:
Q  228 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 327  Q
    |||| ||||| |||| |||||||||||||||||| | |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  19273 tgggtcggttaattttgcttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 19372  T
Q  328 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 419  Q
    ||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||||    
T  19373 gcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggct 19464  T

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Target: scaffold0050 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 404
Target Start/End: Original strand, 36580 - 36773
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    ||||||| |||||| | |||||||| || |||| | ||||||||| |||||| | |||||||| |||| |||||||| | ||||||| | ||||||||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctggt 36678  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 404  Q
    |||| | | | |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  36679 gtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

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Target: scaffold0119 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 417
Target Start/End: Complemental strand, 42329 - 42140
Alignment:
Q  228 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 327  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  42329 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 42230  T
Q  328 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 417  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  42229 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

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Target: scaffold1613 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 201 - 398
Target Start/End: Complemental strand, 1233 - 1038
Alignment:
Q  201 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 299  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  1233 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 1136  T
Q  300 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 398  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  1135 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

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Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 407
Target Start/End: Original strand, 58000 - 58196
Alignment:
Q  210 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 309  Q
    |||||||||| ||| || | ||||||||  ||| ||||||||||||||||||   |||||||| ||||| ||||||| | ||||||| | ||||||||||    
T  58000 ttgtgtgctgatttccattaggccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatc-ttgtttggcgtgatttggtgtttctctggt 58098  T
Q  310 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 407  Q
    ||||   ||| |   |||||||  |  ||||||| ||| ||| ||  |||||||||||||||||||| ||||| | ||||| || ||||  |||||||    
T  58099 gtacctagggtgtatggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtt 58196  T

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Target: scaffold0620 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 3849 - 3896
Alignment:
Q  357 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 404  Q
    |||||||||| ||||||||||||||| ||||||||||  |||||||||    
T  3849 gggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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Target: scaffold0343 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 419
Target Start/End: Original strand, 5751 - 5786
Alignment:
Q  384 ggagtcagttctttgactcaagttggtttttgggct 419  Q
    |||||||||||||||||||| |||||||||||||||    
T  5751 ggagtcagttctttgactcaggttggtttttgggct 5786  T

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