View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_2 (Length: 798)
Name: NF17861_high_2
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 1 - 798
Target Start/End: Complemental strand, 40993847 - 40993043
Alignment:
| Q |
1 |
ctaacaaaactcaccaaaactttttcactattataatttgagctttgattattgtaataatcaataaattgtgccactgtggtacttttatcatatgcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40993847 |
ctaacaaaactcaccaaaactttttcactattataatttgagctttgtttattgtaataatcaataaattgtgccactgtggtacttttatcatatgcat |
40993748 |
T |
|
| Q |
101 |
aaaattgaaaattaacataatctataatgttactataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagc |
200 |
Q |
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| T |
40993747 |
aaaattgaaaattaacataatctataatgttactataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagc |
40993648 |
T |
|
| Q |
201 |
aaaactaataacgttgttattttttagagttgtaattaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaatgtca |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40993647 |
aaaactaataacgttgttatttttgagagttgtaattaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaacgtca |
40993548 |
T |
|
| Q |
301 |
attccatctaaattatatgtcttgattatgcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgc |
400 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40993547 |
attccatctaaattatacgtcttgattatgcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgc |
40993448 |
T |
|
| Q |
401 |
cttgaacagtgtctccaccaagactaagagctactttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtccca |
500 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40993447 |
cttgaacggtgtctccaccaagactaagagctactttgacatttggattttgatttttgatgaaagagacttcggaagggctaagattttgagtgtccca |
40993348 |
T |
|
| Q |
501 |
aaagatgttgaagtttccatttgtgggagaaggaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttata |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40993347 |
aaagatgttgaagtttccatttgtgggagaaggaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttata |
40993248 |
T |
|
| Q |
601 |
ggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcg |
700 |
Q |
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| T |
40993247 |
ggaacatctgaaaatttgacacctttgaattgagctccaatgtattctcggaataggtttgagtttgcagctaggatagttgatgcaaacaaggaagtcg |
40993148 |
T |
|
| Q |
701 |
ttagaattaaaaggataaagcatggtttgggaatgtgaagttccatt-------gtgatattgctactttagagttatgctagatattgtacaaggaaat |
793 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40993147 |
ttagaattaaaaggataaagcatggtttgggaatgtgaagttccattgtgaattgtgatattgctactttagagttaggctagatattgtacaaggaaat |
40993048 |
T |
|
| Q |
794 |
gatgc |
798 |
Q |
| |
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||||| |
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| T |
40993047 |
gatgc |
40993043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 30 - 655
Target Start/End: Complemental strand, 29059300 - 29058675
Alignment:
| Q |
30 |
attataatttgagctttgattattgtaataatcaataaattgtgccactgtggtacttttatcatatgcataaaattgaaaattaacataatctataatg |
129 |
Q |
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|||||||||||| ||||| || ||| | |||||||||||||| | ||| | |||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29059300 |
attataatttgaactttgtttgttgaagtaatcaataaattgggacacacttgtacctttatcataagcataaaattgaaaattaacataatctataaga |
29059201 |
T |
|
| Q |
130 |
ttactataactcttccataaggctaagtaatgattttgaacttcagcatcatcaaatggagcaattgaagcaaaactaataacgttgttattttttagag |
229 |
Q |
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| | |||||||||||||||||||||||| ||| ||||||||| | |||||||||| |||||||| ||||||||| | || || || |||||| | |
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| T |
29059200 |
tgtccataactcttccataaggctaagtagtgactttgaacttgatcatcatcaaaaggagcaatagaagcaaaagtgatgactccatttgcttttaggg |
29059101 |
T |
|
| Q |
230 |
ttgtaattaaccttccaatgcattcagcaaatgtattaggatctccgatgaaatgttcataatcaatgtcaattccatctaaattatatgtcttgattat |
329 |
Q |
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|| | |||||||| |||||||| || ||||| |||||||| | ||| ||||||| || || |||||||| || || ||||| || || |||||||| |
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| T |
29059100 |
ttttgattaacctaccaatgcactctgcaaaggtattagggtttcctttgaaatgctcgtagtcaatgtcgatcccgtctaagttgtactctttgattat |
29059001 |
T |
|
| Q |
330 |
gcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgccttgaacagtgtctccaccaagactaaga |
429 |
Q |
| |
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||||||| |||||||| ||||| || | ||| || |||| |||||||||| ||||| | | | | |||| |||| |||| || || ||||||||| |
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| T |
29059000 |
ttttgtgagcgaagaaactgcgttagagagccatgattcaaccgaagatggatcgaagtaagcatagccaccttcaacactgtcacctcctagactaaga |
29058901 |
T |
|
| Q |
430 |
gctactttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatttgtgggag |
529 |
Q |
| |
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||||| || |||||||||||||| | |||||||| || |||| |||||| |||| |||| ||||||||||||||||| || |||||||| ||||| | |
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| T |
29058900 |
gctaccttaacatttggattttggctcttgatggatgaaacttgagaagggttaaggttttttgtgtcccaaaagatgttaaattttccattggtgggtg |
29058801 |
T |
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| Q |
530 |
aaggaggagatgaagtatcatagtcaatagcaaaggataaaatgaagtggaaattgacatttgggtttataggaacatctgaaaatttgacacctttgaa |
629 |
Q |
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|||||| |||||| || || ||||| ||| | ||||| | |||||||||||| | ||||| |||||||||||||||||||| || |||| ||| | |
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| T |
29058800 |
aaggagaagatgatgtgtcgtagtcgataccgaaggagagaatgaagtggaattcaacattagggtttataggaacatctgagaacttgatgttgttgga |
29058701 |
T |
|
| Q |
630 |
ttgagctccaatgtattctcggaata |
655 |
Q |
| |
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|| ||||||||||||||||| ||||| |
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| T |
29058700 |
ttcagctccaatgtattctctgaata |
29058675 |
T |
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