View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_20 (Length: 424)
Name: NF17861_high_20
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 43117332 - 43116948
Alignment:
| Q |
1 |
ccgtttccaattgcaaaatcaaggaatcgaaaactcaattgagttgaaatcttgattgtttaagaatttcggttgtattgttgattatggttcttcacaa |
100 |
Q |
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| T |
43117332 |
ccgtttccaattgcaaaatcaaggaattgaaaactcaattgagttgaaatcttgattgtttaagaattgcggttgtattgttgattatggttcttcacaa |
43117233 |
T |
|
| Q |
101 |
agcttcatgctgaaatgggtattttagattttgtactggattaattgagagtatatgaaaattacacatgccaattatataagactaaaaattgcaatat |
200 |
Q |
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| T |
43117232 |
agcttcatgctgaaatgggtattttaggttttgtactggattaattgagagtatatgaaaattacacatgccaattatataagactaaaaattgcaatat |
43117133 |
T |
|
| Q |
201 |
gattcaactgcattacaagnnnnnnnnttgcatatattcttgtagattaaaaatcatttttcaattgaagaatcgttctcacaactcaaaatagttgata |
300 |
Q |
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||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| || ||||||||| |
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| T |
43117132 |
gattcaactgcattacaagaaaaaaaattgcatatagtcttgtagattaaaaatcatttttcaatttaagaatcattctcacaactcgaagtagttgata |
43117033 |
T |
|
| Q |
301 |
cacatacacattttttcaacaatattggcgtagcttaattttaaaatgacctctttcgcatgtcaacaattgaacattttagttc |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43117032 |
cacatacacattttttcaacaatattggcgtagcttaattttaaaatgacctctttcgcatgtcaacaattgaacattttagttc |
43116948 |
T |
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