View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_29 (Length: 361)
Name: NF17861_high_29
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_29 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 26398420 - 26398744
Alignment:
| Q |
16 |
ggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
115 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398420 |
ggaatcacatgcattgacaaagaggagagcaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
26398519 |
T |
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| Q |
116 |
tgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398520 |
tgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcagaatggcagagcttctgatagttgaaacaacgatgtgtg |
26398611 |
T |
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| Q |
216 |
agataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26398612 |
agataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-aaaaaaaaaaaaacaattaaatgtgttgattttggtgaa |
26398710 |
T |
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| Q |
316 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
349 |
Q |
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| T |
26398711 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
26398744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 277815 - 278140
Alignment:
| Q |
16 |
ggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
115 |
Q |
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|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277815 |
ggaatcacatgcattgacaatgaggagatcaaaattgtatcttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
277914 |
T |
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| Q |
116 |
tgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
277915 |
tgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacaatggcagaatggtagagcttctgatagttgaaacaacgatgtgtg |
278006 |
T |
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| Q |
216 |
agataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
278007 |
agataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattaaaaaaaataaaaacaattaaatgtgttgattttggtgaa |
278106 |
T |
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| Q |
316 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
278107 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
278140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 349
Target Start/End: Original strand, 30705 - 31029
Alignment:
| Q |
16 |
ggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30705 |
ggaatcacatgcattgacaatgaggagaacaaaagtgtaccttaaaaagtgaaatactcttactcttttgttggaattgtgagagaaaaacaccaagaag |
30804 |
T |
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| Q |
116 |
tgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcagaatggcagagcttctgatagttgaaacaacgatgtgtg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30805 |
tgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcagaatggcagagcttctgatagttgaaacaacgatgtgct |
30896 |
T |
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| Q |
216 |
agataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnnnnnnnnnnnnnncaattaaatgtgttgattttggtgaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
30897 |
cgataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-aaaaaaataaaaacaattaaacgtgttgattttggtgaa |
30995 |
T |
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| Q |
316 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30996 |
ccggtaaccaagtcaaaagttaaaagaatagtat |
31029 |
T |
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