View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_high_30 (Length: 355)
Name: NF17861_high_30
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 5389838 - 5390182
Alignment:
| Q |
1 |
ttgtggcataacctctgtttatttcatcctgacgttgtcctccaggctaccatcagcactgt----cctcctcaacctaataaggatctccaatccacca |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5389838 |
ttgtggcataacctctgtttatttcatcctgacgttgtcctccaggctaccatcagcactgtctgtcctcctcaacctaataaggatctccaatccacca |
5389937 |
T |
|
| Q |
97 |
cagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttattgatatctgtaatctatctatctatatg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5389938 |
cagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttatgtgttattgatatctgtaatctatctatctatatg |
5390037 |
T |
|
| Q |
197 |
tatcagtttgttgtgagtgtgaaggtgttatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatata |
296 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5390038 |
tatcagtttgttgtgagtgtgaaagtgttatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatgta |
5390137 |
T |
|
| Q |
297 |
tattatttgtttgc--tatatgtattttgtattgccccatgttat |
339 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
5390138 |
tattatttgtttgctatatatgtattttgtattgtcccatgttat |
5390182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 70 - 260
Target Start/End: Original strand, 5393630 - 5393815
Alignment:
| Q |
70 |
aacctaataaggatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
169 |
Q |
| |
|
|||||||||||||||| || || | |||| |||||||||||||| |||| ||||| |||||||||||||||||| |||||| | ||||||| ||||||| |
|
|
| T |
5393630 |
aacctaataaggatcttcattctatcacatctaaaagtggtaattctaaaattgacagccttccgtgatgagaggttgtggtcatggtttatgtgttat- |
5393728 |
T |
|
| Q |
170 |
gatatctgtaatctatctatctatatgtatcagtttgttgt--gagtgtgaaggtgttatggtatcaaaattatatatttaaataacctttat |
260 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5393729 |
------tgttatctatctatctatatgtatcagtttgttgtacgagtgtgaaagtactatggtatcaaaattatatgtttaaataacctttat |
5393815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 5398804 - 5398892
Alignment:
| Q |
81 |
gatctccaatccaccacagctaaaagtggtaatcctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
169 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
5398804 |
gatctccaatccactgcagctaaaaatggtaatcctacaattgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 5393870 - 5393905
Alignment:
| Q |
292 |
atatatattatttgtttgctatatgtattttgtatt |
327 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5393870 |
atatatattatttgtgtgctatatgtattttgtatt |
5393905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University