View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_high_33 (Length: 350)

Name: NF17861_high_33
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_high_33
NF17861_high_33
[»] chr7 (18 HSPs)
chr7 (12-350)||(35054201-35054544)
chr7 (254-350)||(7760754-7760850)
chr7 (252-340)||(19105421-19105509)
chr7 (252-350)||(7760609-7760707)
chr7 (250-340)||(9686452-9686542)
chr7 (247-348)||(21657293-21657394)
chr7 (252-340)||(29635236-29635323)
chr7 (253-340)||(23797211-23797298)
chr7 (253-340)||(6036550-6036637)
chr7 (253-340)||(21657466-21657553)
chr7 (254-340)||(31198302-31198387)
chr7 (276-337)||(19105281-19105341)
chr7 (252-340)||(8129880-8129967)
chr7 (254-349)||(31172333-31172428)
chr7 (252-349)||(31198456-31198552)
chr7 (274-350)||(4099558-4099633)
chr7 (252-340)||(12821180-12821268)
chr7 (252-340)||(37081261-37081348)
[»] chr8 (15 HSPs)
chr8 (252-340)||(9861569-9861657)
chr8 (247-349)||(33892032-33892134)
chr8 (247-340)||(15229612-15229705)
chr8 (252-341)||(31212314-31212403)
chr8 (252-334)||(37037276-37037357)
chr8 (252-340)||(33892203-33892291)
chr8 (254-341)||(5880029-5880116)
chr8 (242-340)||(29242423-29242520)
chr8 (252-340)||(31212451-31212539)
chr8 (247-298)||(8791916-8791967)
chr8 (252-350)||(6906265-6906362)
chr8 (247-349)||(10070017-10070119)
chr8 (254-350)||(1047259-1047355)
chr8 (277-341)||(36874336-36874400)
chr8 (275-349)||(10069875-10069949)
[»] chr1 (14 HSPs)
chr1 (165-250)||(34141265-34141346)
chr1 (252-334)||(30748952-30749034)
chr1 (252-334)||(30770403-30770485)
chr1 (252-349)||(16706336-16706433)
chr1 (252-350)||(30746918-30747015)
chr1 (252-350)||(30768369-30768466)
chr1 (252-333)||(15393146-15393227)
chr1 (253-326)||(23528229-23528302)
chr1 (257-335)||(20171395-20171472)
chr1 (252-340)||(16706502-16706593)
chr1 (275-339)||(22679494-22679558)
chr1 (275-334)||(13765580-13765639)
chr1 (275-342)||(43473386-43473453)
chr1 (252-340)||(23485671-23485759)
[»] chr2 (17 HSPs)
chr2 (252-341)||(12874681-12874770)
chr2 (242-349)||(4921321-4921428)
chr2 (254-340)||(981084-981169)
chr2 (253-340)||(12874847-12874934)
chr2 (252-350)||(37897576-37897674)
chr2 (252-340)||(7328465-7328552)
chr2 (252-348)||(32483647-32483743)
chr2 (252-340)||(32945613-32945701)
chr2 (253-340)||(16127920-16128007)
chr2 (254-349)||(27847860-27847955)
chr2 (252-350)||(39159252-39159348)
chr2 (247-346)||(39786312-39786411)
chr2 (254-331)||(39786493-39786569)
chr2 (252-340)||(18509498-18509586)
chr2 (292-348)||(25330713-25330769)
chr2 (252-327)||(25330561-25330636)
chr2 (276-350)||(27847990-27848063)
[»] chr3 (12 HSPs)
chr3 (252-340)||(30430271-30430359)
chr3 (252-340)||(6931107-6931195)
chr3 (252-340)||(32618953-32619041)
chr3 (253-340)||(2928096-2928183)
chr3 (260-327)||(27614023-27614090)
chr3 (250-340)||(30173619-30173709)
chr3 (275-334)||(25799497-25799554)
chr3 (276-340)||(45405067-45405131)
chr3 (252-341)||(4304310-4304402)
chr3 (252-330)||(30172072-30172150)
chr3 (275-340)||(34502626-34502691)
chr3 (299-339)||(26404729-26404769)
[»] scaffold0328 (1 HSPs)
scaffold0328 (252-339)||(11011-11097)
[»] chr5 (10 HSPs)
chr5 (234-339)||(25906125-25906230)
chr5 (254-341)||(13657552-13657639)
chr5 (253-340)||(22297764-22297851)
chr5 (253-340)||(22297929-22298016)
chr5 (252-340)||(2344631-2344719)
chr5 (247-339)||(20510463-20510555)
chr5 (246-349)||(6843077-6843180)
chr5 (250-340)||(17047854-17047944)
chr5 (254-347)||(29673698-29673791)
chr5 (252-349)||(38298695-38298792)
[»] chr6 (10 HSPs)
chr6 (253-340)||(13340445-13340532)
chr6 (252-339)||(31298892-31298979)
chr6 (247-341)||(13340609-13340703)
chr6 (252-348)||(34637426-34637521)
chr6 (250-340)||(24704306-24704396)
chr6 (252-350)||(30519682-30519779)
chr6 (252-321)||(403308-403376)
chr6 (252-340)||(31298725-31298813)
chr6 (247-340)||(34637591-34637684)
chr6 (247-350)||(12290126-12290228)
[»] chr4 (16 HSPs)
chr4 (250-340)||(13552829-13552919)
chr4 (252-349)||(28687619-28687715)
chr4 (252-340)||(7513528-7513616)
chr4 (276-340)||(32186634-32186698)
chr4 (252-340)||(54164467-54164555)
chr4 (259-350)||(17431117-17431208)
chr4 (275-341)||(34665004-34665070)
chr4 (252-340)||(54164633-54164721)
chr4 (250-330)||(17250461-17250541)
chr4 (252-328)||(17430714-17430790)
chr4 (276-348)||(28687486-28687558)
chr4 (252-350)||(16854784-16854882)
chr4 (278-328)||(17168814-17168864)
chr4 (278-328)||(17174386-17174436)
chr4 (253-311)||(32185283-32185341)
chr4 (252-330)||(33752710-33752788)
[»] scaffold0025 (1 HSPs)
scaffold0025 (252-349)||(63983-64080)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 35054201 - 35054544
Alignment:
Q  12 tgagatgaaacgagtctctttcagcttaatcaagtgaaaaaccgtgcacaataatcata--cacaaacacgtactggggagacgtggagtatttttagga 109  Q
    |||||||| ||  |||||||||||||||||||||||| ||| ||||||||| || ||||  ||||||||||||||| |||||||||||||||||||||||    
T  35054201 tgagatgacacaggtctctttcagcttaatcaagtgataaatcgtgcacaacaaacatatgcacaaacacgtactgtggagacgtggagtatttttagga 35054300  T
Q  110 ttccatttaaacacgtacaagggaaagacca--ttgcattatgagattaatg-tccgtccatctcattttcccttcaacctgctcttcattcgttacatt 206  Q
    ||||||||||||||||||||||||| |||||  || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35054301 ttccatttaaacacgtacaagggaatgaccacattacattatgagattaatggtccgtccatctcattttcccttcaacctgctcttcattcgttacatt 35054400  T
Q  207 gtattattggctggcactccatgtctattttatttttaaatttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctt 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35054401 gtattattggctggcactccatgtctattttatttttaaatttagggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctt 35054500  T
Q  307 taaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  35054501 taaaatattctttagacttttggttcctctaaaaatatttatcc 35054544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 350
Target Start/End: Complemental strand, 7760850 - 7760754
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||| |||||| |||||||||  |||| ||||||||||||| |||||| |||||||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcatcc 7760754  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 19105509 - 19105421
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||| |  |||||||||| ||| ||| ||||| ||||| ||||| |||||||||| ||||||||||||||||||    
T  19105509 ggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctctaaaa 19105421  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 7760609 - 7760707
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||||||||||| | ||||||||||||| | ||| | ||||| |||||  ||||||||||||||| ||||||||||||| |||| | |||||||    
T  7760609 ggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaattgttcatcc 7760707  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 9686542 - 9686452
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||||| || |||||||||  || |||| ||||| |||||  ||||||||| ||||| |||||||||| |||||||    
T  9686542 aaggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaa 9686452  T

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Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 21657293 - 21657394
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattc 346  Q
    |||| |||||||||||||||| || || |||||||||  ||||||||| ||| |  || ||||||||||||||||||||||||| | || |||||| |||    
T  21657293 tttagggttaaataagtaaatggtcctcctaaatatatcaacatttaactttagctcccttaaaatattctttagacttttggttcttcaaaaaattttc 21657392  T
Q  347 at 348  Q
    ||    
T  21657393 at 21657394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 29635236 - 29635323
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||| || |  |||||||||  ||||||| ||||| ||||| | ||||||||| |||||||||||||||||||||||    
T  29635236 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcccct-aaaatattccttagacttttggtccctctaaaa 29635323  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 23797298 - 23797211
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||| ||||||||||   |||||||||  ||||||| ||||| |||||| |||||||||  ||||| |||||||||||||||||    
T  23797298 gttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaaaa 23797211  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 6036550 - 6036637
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||||  |||||||||  ||||||| ||||| ||||| |||||||| | |||||  |||||| | ||||||||    
T  6036550 gttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggtttttggcctctctaaaa 6036637  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 21657553 - 21657466
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||    |||||||||||||||||| || || | ||| ||||||||||| |||  |||||| |||||||||||    
T  21657553 gttaaataagtaaatagtctccctaaatatactaacatttgatattagcccccttaaaatattccttacgcttttgatccctctaaaa 21657466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 340
Target Start/End: Original strand, 31198302 - 31198387
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||||  |||||||||| ||||||| ||||| |||| | ||||||||| |||||  | ||| |||||||||||    
T  31198302 ttaaataagtaaatagttcc-ctaaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaaaa 31198387  T

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Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 337
Target Start/End: Original strand, 19105281 - 19105341
Alignment:
Q  276 taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctcta 337  Q
    ||||||||||||||||  ||||| |||| | ||||||||||||||| |||||||||||||||    
T  19105281 taaatatactaacattcgattttagtcc-tctaaaatattctttaggcttttggtccctcta 19105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 8129880 - 8129967
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||| | ||| |||||| ||| ||||||| |||||  ||| |||||||||||  || |||||||||| |||||||||    
T  8129880 ggttaaataagtaaat-gatctcctaaatctaccaacatttgattttaatccttttaaaatatttctttgacttttggttcctctaaaa 8129967  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 31172428 - 31172333
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    ||||||||||||||  | | | ||||||||| ||||||| |||||  |||   ||||||||| |||||  ||||||||||||||||||| ||||||    
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaattttcatc 31172333  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 31198552 - 31198456
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    ||||||||||||||||||| | | ||||||||| ||||||| ||||| || |   |||||||||  |||| ||||||| |||||||||| | ||||||    
T  31198552 ggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatatttcttaggcttttgg-ccctctaaaatttttcatc 31198456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 350
Target Start/End: Complemental strand, 4099633 - 4099558
Alignment:
Q  274 tctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||| || |||||||| ||||| ||||||| ||||||||||||| | |||| ||||||| |||| ||| |||||    
T  4099633 tctaaatctattaacatttgattttagtccctt-aaaatattctttaaatttttagtccctcaaaaattatccatcc 4099558  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 12821180 - 12821268
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||| || |   ||||||||| ||| ||| |||||  ||||  ||||||||| ||||| |||||||| |||||||||    
T  12821180 ggttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcctctaaaa 12821268  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 37081348 - 37081261
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||| |||  |||||||||  ||| ||| ||||| |||||   ||||||||| ||||  |||||||||||||||||    
T  37081348 ggttaaataagtaaata-ttcccctaaatatatcaacgtttgattttagtcccccaaaaatattccttaggtttttggtccctctaaaa 37081261  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 9861569 - 9861657
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||| || |||||||||  ||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||    
T  9861569 ggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaa 9861657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 247 - 349
Target Start/End: Original strand, 33892032 - 33892134
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattc 346  Q
    |||| ||||||||||||||||||||||  ||||||||| ||||||| ||||| ||||| | ||||||||||||||  ||||||||| ||||||||| |||    
T  33892032 tttagggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttc 33892131  T
Q  347 atc 349  Q
    |||    
T  33892132 atc 33892134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 247 - 340
Target Start/End: Original strand, 15229612 - 15229705
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||| |||||||||||||||||||||   ||||||||| ||||||| ||||| |||||| ||||||||||||| |||||||| |||||||||||    
T  15229612 tttagggttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaaaa 15229705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 31212314 - 31212403
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    ||||||||||||||||||| |   ||||||||  ||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||||    
T  31212314 ggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaaaaa 31212403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 37037357 - 37037276
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccct 334  Q
    |||||||||||||||| || ||||||||||| | ||||||| ||||| |||||| |||||||||| ||| |||||||||||||    
T  37037357 ggttaaataagtaaatggt-cttctaaatattccaacatttgattttagtccctctaaaatattccttatacttttggtccct 37037276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 33892291 - 33892203
Alignment:
Q  252 ggttaaataagtaaatagttcttct-aaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||| | | ||||| |||||||| ||||||| ||||| |||||||||||||||||||||   |||||||||||||||||    
T  33892291 ggttaaataagtaaacaat-cttcttaaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaaaa 33892203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 5880116 - 5880029
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||||||||||||| ||||| ||||||| || ||||||| ||||| |||| |||||||||||| ||||| |||| || |||| |||||    
T  5880116 ttaaataagtaaattgttctcctaaataaaccaacatttgatttttgtccttttaaaatattccttagattttttgttcctcaaaaaa 5880029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 29242423 - 29242520
Alignment:
Q  242 ttaaatttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||| ||| |||||||||||||| | || | |||||| |||| ||||||| ||||| |||||| |||||||||| |||| |||||||| |||||||||    
T  29242423 ttaaaattagggttaaataagtaacttgtccctctaaa-ataccaacattttattttagtccctctaaaatattcattaggcttttggttcctctaaaa 29242520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 31212539 - 31212451
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||||    |||||||||| ||||||| ||||| |||||  |||||||||||||||  ||||| | |||||||||    
T  31212539 ggttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttgtttcctctaaaa 31212451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 8791967 - 8791916
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaatttt 298  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||| |||||    
T  8791967 tttagggttaaataagtaaatagttctcttaaatatactaacatttgatttt 8791916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 6906265 - 6906362
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||||||||||||| |  |||||||||| ||||||| | ||| |||||  |||||||||| |||| |||||||||| || |||| | |||||||    
T  6906265 ggttaaataagtaaatagtccccctaaatataccaacatttga-tttagtccccataaaatattccttaggcttttggtccttccaaaatttttcatcc 6906362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 10070119 - 10070017
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattc 346  Q
    |||| ||||||||||| |||||||||  |||||||||| || |||| |||||  |||   ||||||||| |||||  ||||||||||||||||| | |||    
T  10070119 tttagggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaatttttc 10070020  T
Q  347 atc 349  Q
    |||    
T  10070019 atc 10070017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 1047259 - 1047355
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||||| ||  | ||||||||||||| |||| |||||  |||   ||||| |||| |||||||||||||||||| |||||  |||||||    
T  1047259 ttaaataagtaaatggtcttcctaaatatactaatattttattttaatcctcctaaaacattccttagacttttggtccctcaaaaaaatttcatcc 1047355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 36874336 - 36874400
Alignment:
Q  277 aaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||||| | ||||||||||||| || ||| |||||||||| ||||  ||||||||||||||||||    
T  36874336 aaatatgccaacatttaattttagttcctctaaaatattccttaggtttttggtccctctaaaaa 36874400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 349
Target Start/End: Original strand, 10069875 - 10069949
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    |||||| ||| |||||||||||||   |||| |||||||||||||||  ||||||||| ||||||| | ||||||    
T  10069875 ctaaatgtaccaacatttaattttaacccctctaaaatattctttaggattttggtccttctaaaatttttcatc 10069949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 34141346 - 34141265
Alignment:
Q  165 ccatctcattttcccttcaacctgctcttcattcgttacattgtattattggctggcactccatgtctattttatttttaaattta 250  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| ||||    |||||||||||||||||||||||||||||||||    
T  34141346 ccatctcattttcccttcaacctactcttcattcattacattgttttat----tggcactccatgtctattttatttttaaattta 34141265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 30748952 - 30749034
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccct 334  Q
    |||||||||||||||| || || |||||||||| || |||| ||||| |||||  ||||||||||||||| ||||||||||||    
T  30748952 ggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtccct 30749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 30770403 - 30770485
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccct 334  Q
    |||||||||||||||| || || |||||||||| || |||| ||||| |||||  ||||||||||||||| ||||||||||||    
T  30770403 ggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtccct 30770485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 349
Target Start/End: Original strand, 16706336 - 16706433
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    |||||||| || ||||| | | ||||||||||| ||||||| ||||| |||||| |||||| |||||||| |||||||||| ||||||| | ||||||    
T  16706336 ggttaaatgagaaaatattccctctaaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaaaatttttcatc 16706433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 30747015 - 30746918
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||||||||||| | | ||||||||||| ||||||| ||||| ||||||| ||||||||| ||||| ||||| |  || ||||||| |||||||    
T  30747015 ggttaaataagtaaataat-catctaaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaattttcatcc 30746918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 30768466 - 30768369
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||||||||||| | | ||||||||||| ||||||| ||||| ||||||| ||||||||| ||||| ||||| |  || ||||||| |||||||    
T  30768466 ggttaaataagtaaataat-catctaaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaattttcatcc 30768369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 15393146 - 15393227
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccc 333  Q
    ||||||||||||||||||| ||   |||||||| || |||||||||| |||||  |||||||||| |||| |||||||||||    
T  15393146 ggttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatattccttaggcttttggtccc 15393227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 23528302 - 23528229
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttt 326  Q
    ||||||||||||||||||  |||||||||||  ||||||||||||| |||| | | ||||||||||||| ||||    
T  23528302 gttaaataagtaaatagtctttctaaatatatcaacatttaattttagtccttctgaaatattctttaggcttt 23528229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 20171395 - 20171472
Alignment:
Q  257 aataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctc 335  Q
    ||||||||||| || || || ||||||| ||||||| ||||| |||||| |||||||||  ||||||||||||||||||    
T  20171395 aataagtaaatggt-ctccttaatataccaacatttgattttagtccctctaaaatatttcttagacttttggtccctc 20171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 16706593 - 16706502
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatacta---acatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||| ||||||||| |  |||||||||| |   |||||| ||||| |||||  |||||||||||||||  |||||||||||||||||    
T  16706593 ggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaaaa 16706502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 339
Target Start/End: Complemental strand, 22679558 - 22679494
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaa 339  Q
    |||||||||| ||||||| ||||| |||||| |||||||||  ||||  ||||||||||||||||    
T  22679558 ctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaa 22679494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 13765580 - 13765639
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccct 334  Q
    |||||||||| ||||||| ||||| |||||  |||||||||||||||  |||||||||||    
T  13765580 ctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccct 13765639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 43473453 - 43473386
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaat 342  Q
    |||||||||| || |||| |||||  | ||||||||||||| ||||||||||| |||||| |||||||    
T  43473453 ctaaatatacaaatatttgattttaatacctttaaaatattttttagacttttagtccctataaaaat 43473386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 23485671 - 23485759
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||| ||||||||||||||    ||||||||| ||| |||| ||||| |||| ||||||||  | |||| | |||||||||||||||||    
T  23485671 ggttgaataagtaaatagtctccctaaatatattaatatttgattttagtccatttaaaatgctttttaaatttttggtccctctaaaa 23485759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 252 - 341
Target Start/End: Original strand, 12874681 - 12874770
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||||||||||||||| |||   |||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||| |||||||||    
T  12874681 ggttaaataagtaaatggtttccctaaatataccaacatttgattttggtccctttaaaatatcccttagacttttggtctctctaaaaa 12874770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 4921428 - 4921321
Alignment:
Q  242 ttaaatttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    ||||||||| |||||||||| ||||||||   ||||||||||  ||||||| |||||  |||| |||||||||| |||||| |||| |||||||||||||    
T  4921428 ttaaatttagggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaa 4921329  T
Q  342 tattcatc 349  Q
    | ||||||    
T  4921328 ttttcatc 4921321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 981169 - 981084
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||   ||||||||||| ||||||| ||||| ||||| | |||||||||||||| ||||||||||||||||||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtcccct-aaaatattctttaggcttttggtccctctaaaa 981084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 12874934 - 12874847
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||  | | |||||||| || |||| ||||| |||||| ||||||||| |||||  |||||||||||||||||    
T  12874934 gttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaaaa 12874847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 37897576 - 37897674
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||||| ||||||  || ||||||| || ||||||| |||||  ||||| |||||||||| ||||  ||| ||||||||||||||| |||||||    
T  37897576 ggttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcatcc 37897674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 7328552 - 7328465
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||||    |||||||||||||||||| | ||| ||||| | ||||||||||||||  | |||||||||||||||    
T  7328552 ggttaaataagtaaatagtctccctaaatatactaacatttgactttagtcccat-aaaatattctttaggttattggtccctctaaaa 7328465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 32483647 - 32483743
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcat 348  Q
    ||||||||||||||||| ||| | |||||||||| |||||| |||||  | ||  ||||||||| ||||| ||||||||  |||||||||| |||||    
T  32483647 ggttaaataagtaaataattcctttaaatatactgacatttgattttaattcccataaaatattttttaggcttttggtttctctaaaaattttcat 32483743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 32945613 - 32945701
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||| ||||||||| |  | |||||||| ||||||| ||||| |||||  ||||||||| |||||| ||||| |||||||||||    
T  32945613 ggttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaaaa 32945701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 16127920 - 16128007
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||| |   ||||||||| ||||||||||||| ||||   ||||||||| | |||  |||||||||||||||||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaa 16128007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 349
Target Start/End: Original strand, 27847860 - 27847955
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    ||||||||||||||||| |   ||||||||| ||||||| ||||| ||||  ||||||||||| |||   ||||||||||| ||||| ||||||||    
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccctttaaaattattcatc 27847955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 39159348 - 39159252
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||| |||||| ||  ||||||||||||||||| ||||| |  || | ||||||||||||||  |||||||||||| |||||  |||||||    
T  39159348 ggttaaataagttaatagtcctcttaaatatactaacatttgattttag--ccataaaaatattctttaggattttggtccctccaaaaaatttcatcc 39159252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 346
Target Start/End: Original strand, 39786312 - 39786411
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattc 346  Q
    |||| ||||||||||||||||| | ||  ||||||||| ||||||| ||||| ||| |  |||||| ||| ||||||||||||||  || ||||||||||    
T  39786312 tttagggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaatattc 39786411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 39786569 - 39786493
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtc 331  Q
    ||||||||||||||||| ||  ||||||||| | ||||||||||| |||||  ||||||||| |||||| ||||||||    
T  39786569 ttaaataagtaaatagt-ctcataaatataccagcatttaattttagtccccctaaaatattttttagaattttggtc 39786493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 18509498 - 18509586
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||| ||||| || |  |||||||||| ||||||| ||||| |||||| |||||||||| || |  |||||||||||| ||||    
T  18509498 ggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctccaaaa 18509586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 25330769 - 25330713
Alignment:
Q  292 taattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcat 348  Q
    ||||||| |||||||||||||||| |||||  ||||||||| ||||||||| |||||    
T  25330769 taattttagtccctttaaaatattttttaggtttttggtccttctaaaaattttcat 25330713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 25330561 - 25330636
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagactttt 327  Q
    ||||||||||||||||||| |  ||||||| |  ||||||| ||||| |||||| |||||| ||||||||| ||||    
T  25330561 ggttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccctctaaaattttctttagattttt 25330636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 350
Target Start/End: Complemental strand, 27848063 - 27847990
Alignment:
Q  276 taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||| ||||||| ||||| ||| ||||||||||||  |||  ||||||||||||| ||||| ||||||||    
T  27848063 taaatataccaacatttgattttagtctctttaaaatattacttaagcttttggtccctccaaaaa-attcatcc 27847990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 30430271 - 30430359
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||| || | ||||||||||| ||||||| ||||| || ||| ||||||||||||||| ||||||||||||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtccctctaaaa 30430359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 6931195 - 6931107
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||| ||  ||||||||||||||||| ||||| |||||||||||| |||  ||||  ||||| || ||||||||    
T  6931195 ggttaaataagtaaatagtcctcttaaatatactaacatttgattttagtccctttaaaacatttcttaggtttttgatctctctaaaa 6931107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 32619041 - 32618953
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||||| ||||||||||  ||||||| ||||| |||  | ||||||||| |||||| |||| || |||||||||    
T  32619041 ggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaa 32618953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 2928096 - 2928183
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||| || || |||||||||| ||||||| ||| | |||||| |||||| ||| |||| ||||||||||||| ||||    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctccaaaa 2928183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 27614023 - 27614090
Alignment:
Q  260 aagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagactttt 327  Q
    |||||||||||||  |||||||||| ||||||||||||| ||| |  |||||||||||||||||||||    
T  27614023 aagtaaatagttcccctaaatataccaacatttaattttagtctccataaaatattctttagactttt 27614090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 30173709 - 30173619
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||| ||||||||   |||||||||| || |||| ||||| |||||  |||||| |||||||| |||||| |||||||||||    
T  30173709 aaggttaaataagaaaatagtttccctaaatataccaatatttgattttagtccccctaaaattttctttaggcttttgatccctctaaaa 30173619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 25799554 - 25799497
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccct 334  Q
    |||||||||| ||||||||||||| ||| |||||||||||||  ||||||||||||||||    
T  25799554 ctaaatataccaacatttaattttagtctctttaaaatattc--tagacttttggtccct 25799497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 45405131 - 45405067
Alignment:
Q  276 taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||| ||||| |||||  ||||||||||||||| ||||| ||||||| ||||    
T  45405131 taaatatactaacatttgattttagtccccctaaaatattctttaggcttttagtccctccaaaa 45405067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 4304402 - 4304310
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagactttt---ggtccctctaaaaa 341  Q
    ||||||||||||||||| |    |||||||||| ||||||| ||||| |||||| |||||||||| ||||| ||||   ||||||||||||||    
T  4304402 ggttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatattcattagatttttggcggtccctctaaaaa 4304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 330
Target Start/End: Original strand, 30172072 - 30172150
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggt 330  Q
    |||||||||||||||| || |  |||||||||  ||||||| ||||| ||||| ||||||||||||||||  |||||||    
T  30172072 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttggt 30172150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 34502626 - 34502691
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||  ||||||| ||||| |||||| ||||||||| ||||| ||||| ||||||||||||    
T  34502626 ctaaatatatcaacatttgattttagtccctataaaatattttttaggcttttcgtccctctaaaa 34502691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 26404729 - 26404769
Alignment:
Q  299 ggtccctttaaaatattctttagacttttggtccctctaaa 339  Q
    ||||||| ||||||||||||||| |||||| ||||||||||    
T  26404729 ggtccctataaaatattctttaggcttttgatccctctaaa 26404769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 11011 - 11097
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaa 339  Q
    |||||||||||||||||||  ||||||||||||||||| || ||||| || |||||||||||||||||||| |||| ||| |||||||    
T  11011 ggttaaataagtaaatagta-ttctaaatatactaacagttgattttagttcctttaaaatattctttagatttttagtctctctaaa 11097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 339
Target Start/End: Complemental strand, 25906230 - 25906125
Alignment:
Q  234 ttttatttttaaatttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccc 333  Q
    ||||||| || | |||| ||||||||||||||||| | || |||||||||  ||||||| ||||| |||||  | ||||||||||||| |||||||||||    
T  25906230 ttttattgtttattttagggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccc 25906131  T
Q  334 tctaaa 339  Q
    ||||||    
T  25906130 tctaaa 25906125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 13657552 - 13657639
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||||||| ||||| || | | ||||||||| ||||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||    
T  13657552 ttaaataaataaatggtccctttaaatatacaaacatttgattttagttcctctaaaatattctttagacttttggtctctctaaaaa 13657639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 22297764 - 22297851
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||| | ||||||||||  ||||||| ||||| |||||| ||||||||| |||||  ||||||||||| |||||    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaa 22297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Complemental strand, 22298016 - 22297929
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||| || |  |||||||||||||||||| ||||| ||||| |||||||||| ||||   |||||||||||||||||    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaa 22297929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 2344719 - 2344631
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||| || ||||||| || ||||||| ||||| || ||| ||| |||||| |||| |||||||||||| |||||    
T  2344719 ggttaaataagtaaatagtcctcctaaatagaccaacattttattttagttcctctaacatattccttagtcttttggtccctttaaaa 2344631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 20510555 - 20510463
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaa 339  Q
    |||| ||||||| ||||||||||| ||  ||||||||  ||||||| ||||| ||||| |||||||||| ||||| |||||| ||||||||||    
T  20510555 tttagggttaaaaaagtaaatagtcctcataaatatataaacatttgattttagtcccattaaaatattttttaggcttttgatccctctaaa 20510463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 6843077 - 6843180
Alignment:
Q  246 atttaaggttaaataagtaaatagt-tcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatat 344  Q
    ||||| |||||||||| |||||||| |||| ||||||||| ||||||| ||||| ||||   || ||||||| ||||| ||||||||||||||||| | |    
T  6843077 atttagggttaaataaataaatagtctctt-taaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttt 6843175  T
Q  345 tcatc 349  Q
    |||||    
T  6843176 tcatc 6843180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 17047854 - 17047944
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||| |||||| |||||||||   ||||||||||| || |||| ||||| | ||   |||||||||||||| |||||||||||||||||||    
T  17047854 aaggctaaatatgtaaatagtctctctaaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaaaa 17047944  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 29673791 - 29673698
Alignment:
Q  254 ttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattca 347  Q
    |||||||||||||| ||||  |||||||||| ||||||| ||||| || ||| |||||||||  |||   |||||||||||| |||||| ||||    
T  29673791 ttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatatttcttaaggttttggtccctccaaaaattttca 29673698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 349
Target Start/End: Original strand, 38298695 - 38298792
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    ||||||||||||||||  |   ||||||||||  || |||| ||||  |||||| |||||||||||||||  |||| ||| ||||||||| |||||||    
T  38298695 ggttaaataagtaaatgatcagtctaaatatatcaatatttgatttaagtccctctaaaatattctttaggttttttgtctctctaaaaaaattcatc 38298792  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 340
Target Start/End: Original strand, 13340445 - 13340532
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||| |   ||||||||| ||||||| ||||| |||||| ||||| ||||||||| ||||||||||||| ||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccctataaaacattctttaggcttttggtccctccaaaa 13340532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 339
Target Start/End: Complemental strand, 31298979 - 31298892
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaa 339  Q
    ||||||||||||||||||| | | ||||||||| || |||| ||||| || ||| ||||||||||||||| |||||| ||||||||||    
T  31298979 ggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaaa 31298892  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 13340703 - 13340609
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||| ||||||||| | ||||||| |   ||||||||||||||||| ||||| |||||  |||||||||||||||  ||||||||||||||||||    
T  13340703 tttagggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaa 13340609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 34637426 - 34637521
Alignment:
Q  252 ggttaaataagtaaatagttcttc-taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcat 348  Q
    ||||||||||||||||||| || | ||||||||| ||||||| ||||| ||||| | ||||||||||| ||||||||||||||| |||||| ||||||    
T  34637426 ggttaaataagtaaatagt-ctccataaatataccaacatttgattttagtcccct-aaaatattcttgagacttttggtccctttaaaaaaattcat 34637521  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 24704306 - 24704396
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||| ||||||||||| |||| ||||||||||| || |||| ||||| ||| |  ||||||||| ||||  ||||||||||||||||||    
T  24704306 aaggttgaataagtaaatggttcctctaaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaa 24704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 350
Target Start/End: Original strand, 30519682 - 30519779
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||||||| || | ||||||||||| ||||||| |||||  || |||||||||||| ||||   ||||||||||||||||| | |||||||    
T  30519682 ggttaaataagtaaatggt-cgtctaaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcatcc 30519779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 403308 - 403376
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttag 321  Q
    ||||||||||||||||||| | |||||||| ||||| ||||||||||  | ||| |||||||||||||||    
T  403308 ggttaaataagtaaatagtccctctaaataaactaatatttaattttaat-cctctaaaatattctttag 403376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 31298725 - 31298813
Alignment:
Q  252 ggttaaataagtaaatagt-tcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||  | |||| |||| |||| |||||||||||||  ||||| |||||||||  |||| ||||||||||||||||||    
T  31298725 ggttaaataagtaaatgatctctt-taaaaataccaacatttaattttaatccctctaaaatatttcttaggcttttggtccctctaaaa 31298813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 340
Target Start/End: Complemental strand, 34637684 - 34637591
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||| |||||||||||||||||||    |||||||||  ||||||| ||||| || ||  |||||||||||| ||  |||||||||||||||||    
T  34637684 tttagggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaa 34637591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 350
Target Start/End: Complemental strand, 12290228 - 12290126
Alignment:
Q  247 tttaaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaa-tattctttagacttttggtccctctaaaaatatt 345  Q
    |||| |||||||||||||||| | ||  |||||||||| ||||||||||||| || ||| |||||  ||||||| | |||||||||||| |||||| |||    
T  12290228 tttagggttaaataagtaaat-gatcccctaaatataccaacatttaattttagttcctctaaaacaattctttcg-cttttggtccctttaaaaaaatt 12290131  T
Q  346 catcc 350  Q
    |||||    
T  12290130 catcc 12290126  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 13552919 - 13552829
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||||||||||||||| || |||||||||  || |||| ||||| |||||  ||||||||| ||||| |||||||||| |||||||    
T  13552919 aaggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaa 13552829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 28687715 - 28687619
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||| ||  || ||||||||| |||||  ||||||||||||||||| | ||||||    
T  28687715 ggttaaataagtaaatagttctt-taaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaaaatttttcatc 28687619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 7513528 - 7513616
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||  |  | |||||||||| ||||| |||||||| | |||||||    
T  7513528 ggttaaataagtaaatagctcctctaaatataccaacatttaattttaattaccttaaaatattttttaggcttttggttcatctaaaa 7513616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 32186698 - 32186634
Alignment:
Q  276 taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    ||||||||| ||||||||||||| || ||| ||||||||||||||| ||||||||| ||||||||    
T  32186698 taaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtctctctaaaa 32186634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 54164467 - 54164555
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||||  |||||||||||| ||||||| ||||| ||||   ||||||||  ||||| |||||||||| |||||||    
T  54164467 ggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaaaa 54164555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 350
Target Start/End: Complemental strand, 17431208 - 17431117
Alignment:
Q  259 taagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    ||||||||| || | ||||||||||  ||||||| ||||| |||||  ||||||||| ||||| ||||||||||||| |||||| |||||||    
T  17431208 taagtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcatcc 17431117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 34665004 - 34665070
Alignment:
Q  275 ctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaa 341  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||||  |||||  |||||||||||    
T  34665004 ctaaatatactaacatttgattttagtccccttaaaatattctttaggtttttgacccctctaaaaa 34665070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 54164721 - 54164633
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaa 340  Q
    |||||||||||||||||||    |||||||||| ||||||| ||||| ||| || ||||||||| |||||  ||| |||||||||||||    
T  54164721 ggttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaa 54164633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 330
Target Start/End: Original strand, 17250461 - 17250541
Alignment:
Q  250 aaggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggt 330  Q
    |||||||||||||||||| || |||| |||||||| ||||||| |||||  | || ||||||||||  ||||| |||||||    
T  17250461 aaggttaaataagtaaatggtccttccaaatatacaaacatttgattttatttcccttaaaatatttcttagatttttggt 17250541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 328
Target Start/End: Original strand, 17430714 - 17430790
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttg 328  Q
    |||||| ||| ||||| || | ||||||||||| ||||||| ||||| |||||| |||||||||| |||| ||||||    
T  17430714 ggttaagtaaataaattgtccctctaaatataccaacatttgattttagtccctctaaaatattccttaggcttttg 17430790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 28687486 - 28687558
Alignment:
Q  276 taaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcat 348  Q
    ||||||||| |||||||||||||  || || |||||||||| |||  |||||||||| ||||||||| |||||    
T  28687486 taaatataccaacatttaattttaatctctctaaaatattccttatgcttttggtccatctaaaaattttcat 28687558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 16854882 - 16854784
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatcc 350  Q
    |||||||||||||||||||  | ||||||| |  |||||| |||||| |||| | |||||||||| ||||  ||||| | ||| ||||||| |||||||    
T  16854882 ggttaaataagtaaatagtcgtcctaaatagatcaacattaaattttagtccgtctaaaatattccttagttttttgattcctttaaaaattttcatcc 16854784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 17168864 - 17168814
Alignment:
Q  278 aatatactaacatttaattttggtccctttaaaatattctttagacttttg 328  Q
    ||||||| ||||||| ||||| |||||||||||||||| |||||| |||||    
T  17168864 aatatacaaacatttgattttagtccctttaaaatattttttagatttttg 17168814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 17174436 - 17174386
Alignment:
Q  278 aatatactaacatttaattttggtccctttaaaatattctttagacttttg 328  Q
    ||||||| ||||||| ||||| |||||||||||||||| |||||| |||||    
T  17174436 aatatacaaacatttgattttagtccctttaaaatattttttagatttttg 17174386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 32185283 - 32185341
Alignment:
Q  253 gttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaa 311  Q
    ||||||| |||||||||| | ||||||||||| ||||||| ||||| |||||| |||||    
T  32185283 gttaaatgagtaaatagtccctctaaatataccaacatttgattttagtccctctaaaa 32185341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 330
Target Start/End: Complemental strand, 33752788 - 33752710
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggt 330  Q
    |||||||||||||||  || ||| ||||||||  ||||||| ||||| ||| |  ||||||||||||||| ||||||||    
T  33752788 ggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttggt 33752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 349
Target Start/End: Complemental strand, 64080 - 63983
Alignment:
Q  252 ggttaaataagtaaatagttcttctaaatatactaacatttaattttggtccctttaaaatattctttagacttttggtccctctaaaaatattcatc 349  Q
    |||||||| ||||||||||    |||||||||| ||||||||||||| || ||  ||||||||| |||||  |||| |||||||| ||| | ||||||    
T  64080 ggttaaatcagtaaatagtctccctaaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctctcaaatttttcatc 63983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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