View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_high_41 (Length: 300)

Name: NF17861_high_41
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_high_41
NF17861_high_41
[»] chr8 (1 HSPs)
chr8 (14-300)||(38558975-38559261)


Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 38559261 - 38558975
Alignment:
Q  14 tactgctatatataggtgaggtaaaatagatatagataacgtgaaaaggaagctgcatggaaacttccttcctctttgatatatagatagccggcgtgat 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38559261 tactgctatatataggtgaggtaaaatagatatagataacgtgaaaaggaagctgcatggaaacttccttcctcattgatatatagatagccggcgtgat 38559162  T
Q  114 taaggatagagatgttttggaattatttcaatatcatcactataacttaggtttcctcgtaaatgcttggattattaggtatagacattcatacaactat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38559161 taaggatagagatgttttggaattatttcaatatcatcactataacttaggtttcctcgttaatgcttggattattaggtatagacattcatacaactat 38559062  T
Q  214 gttcttaacgaaccgcctcatatactgtcacagctcacattgctgccataatcatacaccacacagcacagataaataaataaattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38559061 gttcttaacgaaccgcctcatatactgtcacagctcacattgctgccataatcatataccacacagcacagataaataaataaattc 38558975  T

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