View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_43 (Length: 282)
Name: NF17861_high_43
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 4702852 - 4702745
Alignment:
| Q |
154 |
aaaactggtaaaaatcaatcagttctagcatatttgcaatatttgagagcagatcataaggcatacttgaccactcagatttccttttctttttgcatat |
253 |
Q |
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| T |
4702852 |
aaaactggtaaaa-tcaatcagttccagcctatttgcaatatttgagagcagatcataaggcatatttgaccactctccattccttttctttttgcatat |
4702754 |
T |
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| Q |
254 |
ggcagaatc |
262 |
Q |
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||||||||| |
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| T |
4702753 |
ggcagaatc |
4702745 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 4706222 - 4706161
Alignment:
| Q |
151 |
atgaaaactggtaaaaatcaatcagttctagcatatttgcaatatttgagagcagatcataag |
213 |
Q |
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| T |
4706222 |
atgaaaacaggtaaaa-tcaatcagttccagcctatttgcaatatttgacagcagatcataag |
4706161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 4706558 - 4706506
Alignment:
| Q |
74 |
aacaatgcaatcctgagatgtaggagcagatgaaaatgctgcaatacagtcat |
126 |
Q |
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|||||| |||||||||||||| ||||||||||||| |||||||||| |||||| |
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| T |
4706558 |
aacaatacaatcctgagatgtgggagcagatgaaattgctgcaatatagtcat |
4706506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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