View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_high_45 (Length: 268)

Name: NF17861_high_45
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_high_45
NF17861_high_45
[»] chr2 (20 HSPs)
chr2 (18-268)||(10348019-10348269)
chr2 (138-253)||(10353469-10353584)
chr2 (18-245)||(9060810-9061037)
chr2 (118-253)||(10372198-10372333)
chr2 (18-268)||(8573151-8573401)
chr2 (28-268)||(9321214-9321454)
chr2 (18-102)||(9328824-9328908)
chr2 (28-103)||(9065409-9065484)
chr2 (18-187)||(9274743-9274912)
chr2 (18-103)||(16269314-16269399)
chr2 (72-192)||(9292213-9292333)
chr2 (29-103)||(10336080-10336154)
chr2 (72-199)||(9316310-9316437)
chr2 (18-103)||(9284007-9284092)
chr2 (127-246)||(7115313-7115432)
chr2 (41-103)||(12005935-12005997)
chr2 (120-189)||(9328926-9328995)
chr2 (138-210)||(9283900-9283972)
chr2 (127-268)||(10336178-10336322)
chr2 (139-187)||(17565808-17565856)
[»] chr4 (1 HSPs)
chr4 (138-253)||(26575221-26575336)
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-268)||(4711-4961)
[»] chr3 (1 HSPs)
chr3 (138-250)||(37462846-37462958)
[»] chr8 (1 HSPs)
chr8 (18-103)||(41966540-41966625)
[»] chr1 (3 HSPs)
chr1 (18-99)||(29467610-29467691)
chr1 (51-103)||(29423529-29423581)
chr1 (53-102)||(29453131-29453180)


Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 10348019 - 10348269
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348019 gttaaacgcgacaattaaagaaggatgtaacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 10348118  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10348119 tgaagatcgtacggcatagcaggaattatcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagta 10348218  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348219 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 10348269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 10353469 - 10353584
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||||||  ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  10353469 aggaattactttccatgagtttgttttcaagctgaagagtctgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagt 10353568  T
Q  238 ttgtaatcaccggata 253  Q
    |||||||| |||||||    
T  10353569 ttgtaatcgccggata 10353584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 9061037 - 9060810
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  9061037 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 9060938  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||||||||||   |||||| | ||||| ||||||||||||||||| ||||| || || |||| ||||||||||  ||||||| || | | ||    
T  9060937 tgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaata 9060838  T
Q  218 agtgagaaattctgaggagtttgtaatc 245  Q
    |   ||  ||||||||||||||||||||    
T  9060837 accaagtgattctgaggagtttgtaatc 9060810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 10372198 - 10372333
Alignment:
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||||||||||| ||||||||||||||| ||||| | |||  ||||||||||||  || |||||||||||||||| | ||||  | |||| ||    
T  10372198 tgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcgaacatgtggatcataaaaagtgctttggtggtcgatta 10372297  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggata 253  Q
    ||| ||| |||||||||||||||| ||| |||||||    
T  10372298 agtaagagattctgaggagtttgtgatcgccggata 10372333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 8573401 - 8573151
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||||  |||||| | |||||||||||||||| |  |||| |||||||| |||||||| ||||||||||||||   | |  | || |    
T  8573401 gttaaatgcgacaattaaccaaggatatgacccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatat 8573302  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagta 217  Q
    |||||| |||| ||| ||   |||||| | ||||| ||||||||||||||||| |||||| | || |||| ||||||||||||||| ||| ||  || ||    
T  8573301 tgaagagcgtatggcgtactgggaattgttttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgacta 8573202  T
Q  218 agtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |   ||| |||| |||||||||||||||  ||| || | ||||||||||||    
T  8573201 accaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccga 8573151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 268
Target Start/End: Original strand, 9321214 - 9321454
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca--aat--cgtataaatgttgaaga 123  Q
    |||||||||||||||||||| ||| |||||||||| || || |||||||||| |||||||||||||||||||||||  |||   | ||| ||    ||||    
T  9321214 acaattaaagaaggatgtaatccaccaagtttctttgtcattatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagat----aaga 9321309  T
Q  124 tcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgag 223  Q
      ||||||||||   |||||||| ||||| ||||||||| |  ||||||||||||| || |||| ||||||||||| ||| ||| ||  |  |||   ||    
T  9321310 gagtacggcatactgggaattattttccacgagtttgttatagagctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaag 9321409  T
Q  224 aaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    | |||||||||||||||||||| |||| ||   ||||||||||||    
T  9321410 agattctgaggagtttgtaatcgccggttaaaggatcaaaaccga 9321454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9328824 - 9328908
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccc 102  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||| || |||||||||| |||||||||||| |||||||||    
T  9328824 gttaaacgcaacaattaaagaaggatgtaatccaccaagtttcttagtcattatccagtgaagagaattctcaaccaaaaccccc 9328908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 9065484 - 9065409
Alignment:
Q  28 acaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||||||||||| ||| |||||||| || || ||| ||||||||||||||||||||||||||||||    
T  9065484 acaattaaagaaggatgtaaccgatctagtttcttcgtcattatcaagtgaatagaattctcaacaaaaaccccca 9065409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 9274743 - 9274912
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    ||||||||  ||||||||| |||| ||| || |||||| || | |||| || | |||||||| ||||||||||||||||| |||||   | |  | || |    
T  9274743 gttaaacgcaacaattaaacaagggtgtgactcatcaatttccctagtcattacccagtgaagagaattctcaacaaaaatccccatggcttgaacatat 9274842  T
Q  118 tgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtg 187  Q
    | |||| |||||||||||   |||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  9274843 ttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaagagtctcacatgtg 9274912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 16269314 - 16269399
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| ||| |||||||||||||||||||| ||||||||||| |  || || ||| |||||||||||||||||||||||||||    
T  16269314 gttaaacgcgacgattaaagaaggatgtaacccgtcaagtttcttcgccattatacagcgaatagaattctcaacaaaaaccccca 16269399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 9292213 - 9292333
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||| |||||||||| |||||||||||||| | | |  | || ||||||| |||||||||||  |||||| || ||||| ||||| |||||  |||||    
T  9292213 ccagtggatagaattctgaacaaaaacccccatagcttgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctg 9292312  T
Q  172 aagagtctcacttgtggatca 192  Q
    ||||||||||| |||||||||    
T  9292313 aagagtctcacctgtggatca 9292333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 10336080 - 10336154
Alignment:
Q  29 caattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||| ||||||||||||||||||  ||| || |||||||||| |||||||||||||||||| ||||    
T  10336080 caattaaacaaggttgtaacccatcaagtttcggagtcattatccagtgaagagaattctcaacaaaaacaccca 10336154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 199
Target Start/End: Original strand, 9316310 - 9316437
Alignment:
Q  72 ccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctg 171  Q
    |||||||| |||||||| ||||||||||||||   | |  | || ||||||| |||||||||||   |||||| | ||||| |||||||||||||||||     
T  9316310 ccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagcta 9316409  T
Q  172 aagagtctcacttgtggatcataaaaag 199  Q
    ||||| || || |||| |||||||||||    
T  9316410 aagagactgacatgtgaatcataaaaag 9316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 9284092 - 9284007
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||||||||| || | | | |||||||||| |||||    || ||||||||||||||||||||||||||||||||||    
T  9284092 gttaaacgcgacaattaaacaaaggtctgacccatcaagattcttttccattatccagtgaatagaattctcaacaaaaaccccca 9284007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Complemental strand, 7115432 - 7115313
Alignment:
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaa 226  Q
    ||||||||  ||||||| || ||||| |||||||||||||| ||||||||||| |  |||| ||||||||||| |||| || ||| |  |||   ||| |    
T  7115432 tacggcattacaggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagaga 7115333  T
Q  227 ttctgaggagtttgtaatca 246  Q
    ||||||| ||||||||||||    
T  7115332 ttctgagaagtttgtaatca 7115313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 12005997 - 12005935
Alignment:
Q  41 gatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||||| |||||||    || |||||||||| |||||||||||||||||||||||    
T  12005997 gatgtaacccatcaggtttcttgaccatcatccagtgaagagaattctcaacaaaaaccccca 12005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 9328926 - 9328995
Alignment:
Q  120 aagatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtgga 189  Q
    |||| |||| ||||||||||||||||| ||||| |||||||||||  || |||||||||| || ||||||    
T  9328926 aagagcgtagggcatagcaggaattattttccaagagtttgttttagagttgaagagtctgacatgtgga 9328995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 9283972 - 9283900
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtaga 210  Q
    ||||||||| ||||| |||||||||||  |||||||||||||  | |||| || |||||||| ||||||||||    
T  9283972 aggaattattttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtaga 9283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 268
Target Start/End: Original strand, 10336178 - 10336322
Alignment:
Q  127 tacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaag---ggttttgtagatcgagtaagtgag 223  Q
    ||||||||| | |||| | | ||||| |||||||||||| ||||||||||| |||  |||| || || |||||   ||| |||||||||||  ||   ||    
T  10336178 tacggcatatccggaagtgttttccaagagtttgttttcgagctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaag 10336277  T
Q  224 aaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    | ||||||||||||||||||||  |||||| |  |||||||||||    
T  10336278 agattctgaggagtttgtaatcggcggataatgaatcaaaaccga 10336322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 17565856 - 17565808
Alignment:
Q  139 ggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtg 187  Q
    |||| ||| ||||| ||||| ||||||||| ||||||||||||||||||    
T  17565856 ggaagtattttccacgagttcgttttcaagttgaagagtctcacttgtg 17565808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 26575221 - 26575336
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  26575221 aggaattattttccatgagtttgttttcaagctgaagagtctaacatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagt 26575320  T
Q  238 ttgtaatcaccggata 253  Q
    |||||||| |||||||    
T  26575321 ttgtaatcgccggata 26575336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 4711 - 4961
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgt 117  Q
    |||||| | |||||||| ||||||||||||||||||||||||||| |  || |||||||||||||||| |||||| ||||||||||  | || | |        
T  4711 gttaaaagcgacaattagagaaggatgtaacccatcaagtttctttgccattatccagtgaatagaatcctcaaccaaaaccccca--tggtttgagcaa 4808  T
Q  118 tga--agatcgtacggcatagcaggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgag 215  Q
     ||  ||  |||||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||  ||     
T  4809 agacaagggcgtacggcatagtaggaattattttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagac 4908  T
Q  216 taagtgagaaattctgaggagtttgtaatcaccggatatttgatcaaaaccga 268  Q
    |||   ||| | |||||||| ||||||||| |||| ||   ||||||||||||    
T  4909 taaccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccga 4961  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 250
Target Start/End: Original strand, 37462846 - 37462958
Alignment:
Q  138 aggaattatcttccaggagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttttgtagatcgagtaagtgagaaattctgaggagt 237  Q
    ||||| ||| ||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |    ||| ||||||||||||    
T  37462846 aggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagccaagagattctgaggagt 37462945  T
Q  238 ttgtaatcaccgg 250  Q
    |||||||| ||||    
T  37462946 ttgtaatcgccgg 37462958  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 41966625 - 41966540
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||| |||||||||| |||| ||||| |||||||||| ||| || || |||||||||| |||||| | ||||||||||||||    
T  41966625 gttaaacgcgacaattaaacaagggtgtaatccatcaagttccttggtcattatccagtgaagagaattgtgaacaaaaaccccca 41966540  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 29467691 - 29467610
Alignment:
Q  18 gttaaacgtgacaattaaagaaggatgtaacccatcaagtttcttagtaataatccagtgaatagaattctcaacaaaaacc 99  Q
    |||||||| || ||||||| |||  ||||||||||||||||||||  | || ||||| |||| |||||||||||||||||||    
T  29467691 gttaaacgcgataattaaacaagattgtaacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaacc 29467610  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 29423529 - 29423581
Alignment:
Q  51 atcaagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccca 103  Q
    |||||||||||  || || |||||||||| |||||||||||||||||||||||    
T  29423529 atcaagtttctccgtcattatccagtgaagagaattctcaacaaaaaccccca 29423581  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 29453180 - 29453131
Alignment:
Q  53 caagtttcttagtaataatccagtgaatagaattctcaacaaaaaccccc 102  Q
    ||||||||  ||| || |||||||||| ||||||||||||||||||||||    
T  29453180 caagtttccgagtcattatccagtgaagagaattctcaacaaaaaccccc 29453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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