View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_47 (Length: 258)
Name: NF17861_high_47
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 1177114 - 1176868
Alignment:
| Q |
1 |
tgcatcactttgttatatttattaatcatccatcgaacttgataatattaaaatttgatatcaactttatgtgtgaaaatgtaatttctcaatcttgata |
100 |
Q |
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| T |
1177114 |
tgcatcactttgttatatttattaatcatccatcgaacttgataatattaaaatttgatatcaactttatgtgtgaaaatgtaatttctcaatcttgata |
1177015 |
T |
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| Q |
101 |
ttatatggtaaaattttattttattgatcatattgcagagagaatatgaagaatttaaagttagaataaattctctagttgcaaaggctaagaaggttcc |
200 |
Q |
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| T |
1177014 |
ttatatggtaaaattttattttattgatcatattgcagagagaatatgaagaatttaaagttagaataaattctctagttgcaaaggctaagaaggttcc |
1176915 |
T |
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| Q |
201 |
agaagaagggtggacaatgcaagatggaatgttatggcctggaaata |
247 |
Q |
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| T |
1176914 |
agaagaagggtggacaatgcaagatggaatgttatggcctggaaata |
1176868 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 5128447 - 5128354
Alignment:
| Q |
136 |
cagagagaatatgaagaatttaaagttagaataaattctctagttgcaaaggctaagaaggttccagaagaagggtggacaatgcaagatggaa |
229 |
Q |
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| T |
5128447 |
cagagagaatatgaagagtataaagtcagagttaatgctttggttgctaaggctcagaaaacaccagatgaagggtggactatgcaagatggaa |
5128354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 54383454 - 54383362
Alignment:
| Q |
135 |
gcagagagaatatgaagaatttaaagttagaataaattctctagttgcaaaggctaagaaggttccagaagaagggtggacaatgcaagatgg |
227 |
Q |
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| T |
54383454 |
gcagagagaatatgaagagtttaaggttaggatcaatgcacttgtggcaaaagctcagaaggttcctgcaggagggtggattatgcaggatgg |
54383362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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