View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_48 (Length: 255)
Name: NF17861_high_48
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_48 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 5050671 - 5050898
Alignment:
| Q |
15 |
cataggctttcattttataaccactttcccacacagctttagctattctccccgatgtgggacttataccagtgctaatatgctac---ccacacaaatt |
111 |
Q |
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| T |
5050671 |
cataggctttcattttataaccactttcccacacagcttcagctattctccccgatgtgggacttataccagtgctaatatgctactacccacacaaatt |
5050770 |
T |
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| Q |
112 |
ttgttaacaattctacataacgatcttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccat |
211 |
Q |
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| T |
5050771 |
ttgttaacaattctacataaggatgttatgctatgttatggatggattggaataggccacaatggaatatcaaaaaatcatttacaacaattgaaaccat |
5050870 |
T |
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| Q |
212 |
gaatccaatgaccaacacaatcaatctt |
239 |
Q |
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| T |
5050871 |
gaatccaatgaccaacacaatcaatctt |
5050898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 51274824 - 51274719
Alignment:
| Q |
137 |
ttatgctatgttatggatgga-ttggaataggccacaatggaatatcaa--aaaatcatttacaacaattgaaa-ccatgaatccaatgaccaacacaat |
232 |
Q |
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| T |
51274824 |
ttatgctatggtatggatggaattggagttggccacaatggaagatcaagtgaaatcatttgcaacgattgaaacccatgaatcccataaccaacaccct |
51274725 |
T |
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| Q |
233 |
caatct |
238 |
Q |
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| T |
51274724 |
caatct |
51274719 |
T |
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