View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_high_5 (Length: 559)
Name: NF17861_high_5
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 17 - 548
Target Start/End: Original strand, 8931874 - 8932405
Alignment:
| Q |
17 |
aacctcaaggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtcc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931874 |
aacctcaaggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtcc |
8931973 |
T |
|
| Q |
117 |
aataattggattacatcaaagtaagacagcaaaccatgtctactaaacatataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaa |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8931974 |
aataattggattacatcaaagtaagacagcaaaccatgtctactaaacaaataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaa |
8932073 |
T |
|
| Q |
217 |
gcagcatttgatagaataaattatcaaacaaaccttttcaagttatcatgggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaa |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8932074 |
gcagcatttgatagaataaataatcaaacaaaccttttcaagttatcatgggagcaaaacattgcaacaacatattcatttgatagcaagagaacaagaa |
8932173 |
T |
|
| Q |
317 |
caatagactaatctttggtttgtgaaattaattattggaaactcaatcnnnnnnntaatattcagaaataatttgcttatggtagaatttcatgggaaaa |
416 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8932174 |
caatagactaatctttggtttgtgaaattaattattggaaactcaatcaaaaaaataatattcagaaataatttgcttatggtagaatttcatgggaaaa |
8932273 |
T |
|
| Q |
417 |
cagctgcagaactatccaaaattttcaatttgtgtttaaaaggattccagaacagaagttcattttgagctcaaattatgaaggaaattctatccatggg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
8932274 |
cagctgcagaactatccaaaattttcaatttgtgtttaaaaggattccagaacagaagttcattttgagctcaaattatgaaggaaattctgtccatagg |
8932373 |
T |
|
| Q |
517 |
cttcattggagacacatcattctttcatctca |
548 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
8932374 |
cttcattggagacacatcattctttcatctca |
8932405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 49443658 - 49443576
Alignment:
| Q |
32 |
actcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
114 |
Q |
| |
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|||| |||||||||||||||| |||||||| |||||| | ||||||||||||| | ||||||| |||||||||||||||||| |
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| T |
49443658 |
actctgtggtaagagtttagccttgtaacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggttattagt |
49443576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 50892220 - 50892281
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
85 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||| ||||||| |
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| T |
50892220 |
aggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccc |
50892281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 48751439 - 48751378
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
85 |
Q |
| |
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|||||||| || |||| ||||| |||||||||||||| |||| |||||||||| ||||||| |
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| T |
48751439 |
aggtgctagctaagtggcaagagcttagcattgtaacctcaagttgctgagttcgaatcccc |
48751378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 31584881 - 31584942
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc |
85 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||| |||||| |||||||||||||||| |
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|
| T |
31584881 |
aggtgctagctcaatggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccc |
31584942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 18332040 - 18332096
Alignment:
| Q |
37 |
gtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggac |
93 |
Q |
| |
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|||| ||||| |||||||||||||| |||||| ||||||| |||| ||| ||||||| |
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| T |
18332040 |
gtggcaagagcttagcattgtaacctcaaggtactgagtttaaataccctctgggac |
18332096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 36198980 - 36198899
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatg |
105 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||||| |||||| |||||||||||||||| | |||| || ||||||||| |
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| T |
36198980 |
aggtgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg |
36198899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Original strand, 23548584 - 23548621
Alignment:
| Q |
45 |
agtttagcattgtaaccgcaaggtgctgagttcaaatc |
82 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||| |
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| T |
23548584 |
agtttagcattgtaacctcgaggtgctgagttcaaatc |
23548621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 43710570 - 43710653
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggt |
107 |
Q |
| |
|
|||||||| | |||||||||||| ||||| |||||||| | ||||| ||||||| ||||||| | ||||| | ||| ||||||| |
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| T |
43710570 |
aggtgctagcacggtggtaagagattagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggt |
43710653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 114
Target Start/End: Original strand, 43427779 - 43427869
Alignment:
| Q |
24 |
aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt |
114 |
Q |
| |
|
|||||||| ||| ||||||||||||| || |||||||| ||||| |||||||||||||| | |||| |||||||||||||||||| |
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|
| T |
43427779 |
aggtgctagctcagtggtaagagtttggccttgtaacctcaagggagggagttcaaatccccttggatacggttgtaaaatggttattagt |
43427869 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 253137 - 253058
Alignment:
| Q |
26 |
gtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatgg |
106 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |||||||| ||||| | ||||||||||||| | ||||||| |||||||||| |
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|
| T |
253137 |
gtgctagctcagtggtaagagcttagccttgtaaccttaaggtacaaagttcaaatcccc-cggggacggttgtaaaatgg |
253058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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