View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_high_54 (Length: 242)

Name: NF17861_high_54
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_high_54
NF17861_high_54
[»] chr7 (6 HSPs)
chr7 (95-171)||(25483809-25483885)
chr7 (22-62)||(25483918-25483958)
chr7 (187-234)||(25483705-25483751)
chr7 (195-236)||(47403115-47403156)
chr7 (197-237)||(21920733-21920773)
chr7 (190-234)||(46534535-46534579)
[»] chr3 (4 HSPs)
chr3 (190-236)||(42527985-42528031)
chr3 (190-236)||(43968281-43968327)
chr3 (190-235)||(6124836-6124881)
chr3 (197-237)||(52959414-52959454)
[»] chr1 (4 HSPs)
chr1 (190-236)||(2459575-2459621)
chr1 (190-237)||(31656316-31656363)
chr1 (190-236)||(38058873-38058919)
chr1 (197-237)||(50940134-50940174)
[»] chr2 (2 HSPs)
chr2 (197-236)||(44525923-44525962)
chr2 (197-237)||(6432293-6432333)
[»] chr8 (1 HSPs)
chr8 (190-236)||(2773512-2773558)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 25483885 - 25483809
Alignment:
Q  95 gtggtatatgtggcatctccctcttttgtgaggtcttagagcattgacctgctgtgggagtgatcgtttgttgggtt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25483885 gtggtatatgtggcatctccctcttttgtgaggtcttagagcattgacctgctgtgggagagattgtttgttgggtt 25483809  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 25483958 - 25483918
Alignment:
Q  22 taacactcactctaacagacttatttatgaggattaagaat 62  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  25483958 taacactcactctaagagacttatttatgaggattaagaat 25483918  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 25483751 - 25483705
Alignment:
Q  187 gataaatgtgaaaagctataaactataagcttaaaagctacttgaaat 234  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  25483751 gataaatgtgaaa-gctataaactataagctcaaaaactacttgaaat 25483705  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 47403115 - 47403156
Alignment:
Q  195 tgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    ||||| ||||||||||||||||| |||||| |||||||||||    
T  47403115 tgaaatgctataaactataagctcaaaagccacttgaaatag 47403156  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 21920733 - 21920773
Alignment:
Q  197 aaaagctataaactataagcttaaaagctacttgaaatagt 237  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  21920733 aaaagctatcagctataagctaaaaagctacttgaaatagt 21920773  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 46534579 - 46534535
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaat 234  Q
    |||||| ||||||||| ||||||||||| |||| |||||||||||    
T  46534579 aaatgttaaaagctatcaactataagctaaaaaactacttgaaat 46534535  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 42527985 - 42528031
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  42527985 aaatgtgaaaagctatcagctataagctaaaaagctacttgaaatag 42528031  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 43968281 - 43968327
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    |||| ||||||||||||| ||| ||||| ||||||||||||||||||    
T  43968281 aaatatgaaaagctataagctacaagctcaaaagctacttgaaatag 43968327  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 6124881 - 6124836
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaata 235  Q
    |||||||||||||||| | ||||||||| |||||||| ||||||||    
T  6124881 aaatgtgaaaagctatcagctataagctaaaaagctatttgaaata 6124836  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 52959454 - 52959414
Alignment:
Q  197 aaaagctataaactataagcttaaaagctacttgaaatagt 237  Q
    |||| |||||||||||||| | |||||||||||||||||||    
T  52959454 aaaaactataaactataagttaaaaagctacttgaaatagt 52959414  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 2459575 - 2459621
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  2459575 aaatgtgaaaagctatcagctataagctaaaaagctacttgaaatag 2459621  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 31656316 - 31656363
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatagt 237  Q
    |||||| ||||||||| | ||||||||| |||||||||||||||||||    
T  31656316 aaatgtaaaaagctatcagctataagctaaaaagctacttgaaatagt 31656363  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 38058919 - 38058873
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    |||||||||||||||| | ||||||||| |||||||| |||||||||    
T  38058919 aaatgtgaaaagctatcagctataagctaaaaagctatttgaaatag 38058873  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 50940134 - 50940174
Alignment:
Q  197 aaaagctataaactataagcttaaaagctacttgaaatagt 237  Q
    |||||||||||  |||||||| |||||||||||||||||||    
T  50940134 aaaagctataagttataagctcaaaagctacttgaaatagt 50940174  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 44525923 - 44525962
Alignment:
Q  197 aaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  44525923 aaaagctataagctataagctcaaaagctacttgaaatag 44525962  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6432333 - 6432293
Alignment:
Q  197 aaaagctataaactataagcttaaaagctacttgaaatagt 237  Q
    ||||||||| | ||||||||| |||||||||||||||||||    
T  6432333 aaaagctatcagctataagctaaaaagctacttgaaatagt 6432293  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 2773512 - 2773558
Alignment:
Q  190 aaatgtgaaaagctataaactataagcttaaaagctacttgaaatag 236  Q
    |||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  2773512 aaatgtaaaaagctatcagctataagctaaaaagctacttgaaatag 2773558  T

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