View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_high_7 (Length: 541)
Name: NF17861_high_7
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_high_7 |
 | |
|
| [»] scaffold0618 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 37119123 - 37119637
Alignment:
| Q |
11 |
caaaggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatcca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119123 |
caaaggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatcca |
37119222 |
T |
|
| Q |
111 |
atccacttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttccttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119223 |
atccacttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttccttt |
37119322 |
T |
|
| Q |
211 |
ttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaacaaagtagaaatcgacaaaaggctagatagaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119323 |
ttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaacaaagtagaaatcgacaaaaggctagatagaat |
37119422 |
T |
|
| Q |
311 |
actaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119423 |
actaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaa |
37119522 |
T |
|
| Q |
411 |
ggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatg |
510 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37119523 |
ggtggcatcatgtgagtacgtgcaatgtgtgttaagtaacgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatg |
37119622 |
T |
|
| Q |
511 |
aaacaatgtacttag |
525 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37119623 |
aaacaatgtacttag |
37119637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 37110871 - 37111382
Alignment:
| Q |
11 |
caaaggaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgtatatcca |
110 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37110871 |
caaaggaactccccatagtttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgcgtatcca |
37110970 |
T |
|
| Q |
111 |
atccacttatgctcactactattagcccaataagctgaaattccaattgaagatccaataatcaacaaaatacacacaatgagatttacttggttccttt |
210 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || |
|
|
| T |
37110971 |
atccatccatgctcactg---ttagcccaagaagctgaaagtccaattgaagatccaataatcaacacaagacacacaatgagatttacttggttccctt |
37111067 |
T |
|
| Q |
211 |
ttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaacaaagtagaaatcgacaaaaggctagatagaat |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| | |||||||| |
|
|
| T |
37111068 |
ttgtagttacctcacttgaataatatctcctcactagaagtgccaatgccacaagcgaaaagataaacaaagtagcaatcgacaagaggttcgatagaat |
37111167 |
T |
|
| Q |
311 |
actaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttcctgttctttcatcaacaagagcaaaccaa |
410 |
Q |
| |
|
| ||||| ||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37111168 |
cccaagatcggtaaagaaagcaacgatagcagtcgctgcaagcattgagattgtagcattcataggtgttcctgttctttcatcaacatgagcaaaccaa |
37111267 |
T |
|
| Q |
411 |
ggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatg |
510 |
Q |
| |
|
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
37111268 |
ggcggcatcatgtgagtacgtgcaatgtgagttaaataacgagcttgaccaacagcaccaaccaacaaaaccgttgtcattccttttaaagcgcctaatg |
37111367 |
T |
|
| Q |
511 |
aaacaatgtacttag |
525 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37111368 |
aaacaatgtacttag |
37111382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 285 - 525
Target Start/End: Complemental strand, 37136856 - 37136616
Alignment:
| Q |
285 |
gaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttcctg |
384 |
Q |
| |
|
||||||||||| ||| | || ||||||| ||||| ||||| || ||||| | || |||||| ||| ||||| || |||||||||| |||||| || | |
|
|
| T |
37136856 |
gaaatcgacaataggtttgaaagaatacgaagatcagtgaaaaatgcaaccacagaagtagctgtaaccattgcaattgtagcattcaaaggtgtcccgg |
37136757 |
T |
|
| Q |
385 |
ttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaaaccgt |
484 |
Q |
| |
|
|| | |||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||| || || ||||||||||||| || |
|
|
| T |
37136756 |
ttttctcatgaacaagagcaaaccaaggaggcatcatgtgagtacgagcaatgtgagttaaataacgtgaggcaccgacaacattaaccaacaaaacagt |
37136657 |
T |
|
| Q |
485 |
tgtcattcctttcaaagcacctaatgaaacaatgtacttag |
525 |
Q |
| |
|
|||||||| ||||| || || |||| ||||||||| |||| |
|
|
| T |
37136656 |
cgtcattcccttcaatgctcccaatgcaacaatgtatttag |
37136616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 37136983 - 37136906
Alignment:
| Q |
158 |
tgaagatccaataatcaacaaaatacacacaatgagatttacttggttcctttttgtagttaccccacttgaataata |
235 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||| || ||||| || |||||||||||||||| |||||||||| |
|
|
| T |
37136983 |
tgaagatccaataatcaaaacaacacatacaatgagcttaacttgattatcttttgtagttaccccagttgaataata |
37136906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 29258748 - 29258661
Alignment:
| Q |
16 |
gaactccccataacttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgt |
103 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||||| |
|
|
| T |
29258748 |
gaactccccataatttaggcttctttgccattggaacacaaagccaaagaccaccggttccaaaaaaccacaatggaacaaaaattgt |
29258661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 3064 - 2991
Alignment:
| Q |
30 |
ttaggcttctttgccattggaacaaaaagccaaagagcacctgtccctaaaaaccacaatggaacaaagattgt |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||| || || |||||||||||||||||||| ||||| |
|
|
| T |
3064 |
ttaggcttctttgccattggaacacaaagccaaagaccaccggttccaaaaaaccacaatggaacaaaaattgt |
2991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University