View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_10 (Length: 512)
Name: NF17861_low_10
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 22658331 - 22658463
Alignment:
| Q |
18 |
tagtgaaacaagaaaagctaaccaagttgttattcacgtgatttaggaatttggcttatctataaaagtaactattttaaacaatattaaatatctctag |
117 |
Q |
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| T |
22658331 |
tagtgaaacaagaaaagctaaccaagttg--attcacgtgatttaggaatttggcttatctgcaaaagtaactattgtaaacaatattaattatctctag |
22658428 |
T |
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| Q |
118 |
atctgtgttaaatgtagtataccaaaacaaattat |
152 |
Q |
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| T |
22658429 |
atctgtgttaaatgtagtataccaaaacaaattat |
22658463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 377 - 504
Target Start/End: Original strand, 22639771 - 22639902
Alignment:
| Q |
377 |
atgcatcattagcttcatttttgctctcaagaaccacatcgatacagcacctatcttata----ttggtgtccttgctataatagaagggaaagttgtta |
472 |
Q |
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| T |
22639771 |
atgcatcattagcttcatttttcctctcaagaaccacatctatacagcacctatcttatatatattggtgtccttgctataatagaagggaaagttgtta |
22639870 |
T |
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| Q |
473 |
aagctgataggtataagttggttgagcttcat |
504 |
Q |
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| T |
22639871 |
aagccgataggtataagttggttgagcttcat |
22639902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 22639520 - 22639620
Alignment:
| Q |
95 |
taaacaatattaaatatctctagatctgtgttaaatgtagtataccaaaacaaattatnnnnnnntaaccccgtgcttgatgcagtcctggtttcatttt |
194 |
Q |
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| T |
22639520 |
taaacaatattaattatctctagatctgtgttaaatgtagtataccaaaacaaattataaaaaaataaccccgtgcttgatgcagtcctggtatcatttt |
22639619 |
T |
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| Q |
195 |
t |
195 |
Q |
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| T |
22639620 |
t |
22639620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 22639640 - 22639681
Alignment:
| Q |
193 |
tttacatacacaggtataaacaaacgactatatagccattta |
234 |
Q |
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| T |
22639640 |
tttacatacacaggtataaacaaacgactatatagccattta |
22639681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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