View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17861_low_12 (Length: 488)
Name: NF17861_low_12
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 38356388 - 38356875
Alignment:
| Q |
1 |
ccaatacaaattccccattgctcccatgttaatctttctgtatcagcaaatttccttagcagttccaccatcaggatttgaagaacaacagtaataccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38356388 |
ccaatacaaattccccattgctcccatgttaatctttctgtatcagcaaatttccttagcagttccaccatcaggatttgaagaacaatagtaataccaa |
38356487 |
T |
|
| Q |
101 |
taattccaagaaacaagtggtttttaagaatcccttcaaatacataaagtttctccatgcttcttgagttgaattcgttgaaaacttggcagagaacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356488 |
taattccaagaaacaagtggtttttaagaatcccttcaaatacataaagtttctccatgcttcttgagttgaattcgttgaaaacttggcagagaacaaa |
38356587 |
T |
|
| Q |
201 |
agtattaaaaattagtgtatcctttacctccttacttacattgaagattgattttccataaaactgcataatcagaagaactgcaatctgatatgaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356588 |
agtattaaaaattagtgtatcctttacctccttacttacattgaagattgattttccataaaactgcataatcagaagaactgcaatctgatatgaagct |
38356687 |
T |
|
| Q |
301 |
tgagctagaaggtttctccacataatgtttgtaattagaggcgcggtacgacctatcggctttttcttcattaactcctttgtaggcctttctgttgcta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356688 |
tgagctagaaggtttctccacataatgtttgtaattagaggcgcggtacgacctatcggctttttcttcattaactcctttgtaggcctttctgttgcta |
38356787 |
T |
|
| Q |
401 |
gtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaacatcaccagaagaaactgctgc |
488 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38356788 |
gtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaacatcaccagaagaaactgctgc |
38356875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 461
Target Start/End: Original strand, 6184936 - 6185028
Alignment:
| Q |
369 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaa |
461 |
Q |
| |
|
|||||| ||||| ||||| |||| ||||| || ||||||||||||| |||||||||||| | ||||||||| | | |||||||| |||||| |
|
|
| T |
6184936 |
cattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataatcaaattcacccataataattgaactgctgttaa |
6185028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 467
Target Start/End: Original strand, 4235812 - 4235910
Alignment:
| Q |
369 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaac |
467 |
Q |
| |
|
|||||| ||||| ||||| |||| ||||| || ||||| ||||||| |||||||||||| | ||||||||| | | |||||||| |||||| ||||| |
|
|
| T |
4235812 |
cattaaatccttagtaggtttttcagttgcaagagccaatgcacctaatgtatccataatcaaattcacccataataattgaactgctgttaacggaac |
4235910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University