View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_13 (Length: 486)
Name: NF17861_low_13
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 341
Target Start/End: Original strand, 53473001 - 53473334
Alignment:
| Q |
8 |
catcatcactatctggtaatctattttgtggtccataaagataggtaatactacttgactaagtgtcctttgcgtcctcgacttggtccttgcttaatca |
107 |
Q |
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| T |
53473001 |
catcattactatctggtaatctattttgtggtccataaagatagataatactacttgactaagtgtcctttgcgtcctcgacttggtccttgcttaatca |
53473100 |
T |
|
| Q |
108 |
atcacacttatcttcatttcattatttaaggtagaaaccgaatttgcgatagacatctcttttttcccggtttagcttaaatcaagcaacaaattcagtc |
207 |
Q |
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| T |
53473101 |
atcacacttatcttcatttcattatttaaggtagaaaccgaatttgcgatagacatctcttttttcccggtttagcttaaatcaagcaacaaattcagtc |
53473200 |
T |
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| Q |
208 |
tttttcttgttccagttaagctacgtcttgaagtgcgttgtggactttagcctttttaaatcacttcctacggcaaatttctttttcaacatgtcacatg |
307 |
Q |
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| T |
53473201 |
tttttcttgttccagttaagctacgtcttgaagtgcgttgtggactttagcctttttaaatcacttcctacggcaaatttctttttcaacatgtcacatg |
53473300 |
T |
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| Q |
308 |
aagatattgatatcaatataatttaattggtcgt |
341 |
Q |
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| T |
53473301 |
aagatattgatatcaatataatttaattggtcgt |
53473334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 363 - 471
Target Start/End: Original strand, 53473322 - 53473430
Alignment:
| Q |
363 |
tttaattggtcgtgtatttatctgttaaattagaatgtttaattattattatctctgtatttggtgtgttatgaannnnnnnaaaacactcaatattaat |
462 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
53473322 |
tttaattggtcgtgtatttatctgttaaattagaatgtttaattattattatctctgtatttggtgtgttatgaattattttaaaacagtcaatattaat |
53473421 |
T |
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| Q |
463 |
attgtaggt |
471 |
Q |
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| T |
53473422 |
attgtaggt |
53473430 |
T |
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