View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_15 (Length: 467)
Name: NF17861_low_15
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 79 - 311
Target Start/End: Original strand, 23253910 - 23254143
Alignment:
| Q |
79 |
gagaggaacgaccagaataaatggcgtgggaagcgcagaaagtttggaagttagagtcgatgagtggatactctttcgaaagagagttcagtggcgccat |
178 |
Q |
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| T |
23253910 |
gagaggaacgaccagaataaatggcgtgggaagcgcagaaagtttggaagttagagtcgatgagtggatactctttcgaaagagagttcagtggtgccat |
23254009 |
T |
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| Q |
179 |
tttcttacaatgccgtcaacaacatgttttctctatcatgatttaaacaaaatattttacgataatttataggatatttttgaaaaattatgaataagtt |
278 |
Q |
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| T |
23254010 |
tttcttacaatgccgtcaacaacatgttttctctatcatgatttaaacaaaatattttacgataaattataccatatttttgaaaaattatgaataagtt |
23254109 |
T |
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| Q |
279 |
ac-tacaattaattaaaggttcatgttaacttat |
311 |
Q |
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| T |
23254110 |
acttacaattaattaaaggttcacgttaacttat |
23254143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Original strand, 23254219 - 23254261
Alignment:
| Q |
367 |
gtgattcctctgtttggaactgtcacagaagaaagaaaggttg |
409 |
Q |
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| T |
23254219 |
gtgattcctctgtttgaaactgtcacagaagaaataatggttg |
23254261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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