View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_16 (Length: 455)
Name: NF17861_low_16
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Complemental strand, 50407786 - 50407355
Alignment:
| Q |
9 |
acatcatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaat |
108 |
Q |
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| T |
50407786 |
acataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaat |
50407687 |
T |
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| Q |
109 |
actcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaaca |
208 |
Q |
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| T |
50407686 |
actcactaatgaaacaaatgtgcttatgcttgtttttgggtatccaagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaaca |
50407587 |
T |
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| Q |
209 |
ccacatgtgccagcaaagaatagcaataacatgtctatgctgaaaagggcttgtaatatagtaaaatcttcaccttgttcaggtggactaaaaatatttt |
308 |
Q |
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| T |
50407586 |
ccacatgtgccagcaaagaatagcaataacatgtctatgctgaaaagggcttgtaatatagtaaaatcttcaccttgttcaggtggactaaaaatatttt |
50407487 |
T |
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| Q |
309 |
gccaccatctagtttcttttacttcaacaacacaaaccattgcattagtatcacaattttttgctgcagactctttcacttcttgatcagttactatttt |
408 |
Q |
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| T |
50407486 |
gccaccatctagtttcttttacttcaacaacacaaaccattgcattagtatcacaattttttgctgcagactctttcacttcttgatcagttactatttt |
50407387 |
T |
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| Q |
409 |
aaccgaaaatggatcaacaaatgcaagctttt |
440 |
Q |
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| T |
50407386 |
aactgaaaatggatcgacaaatgcaagctttt |
50407355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 50385728 - 50385553
Alignment:
| Q |
38 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
137 |
Q |
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| T |
50385728 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50385629 |
T |
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| Q |
138 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccaca |
213 |
Q |
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| T |
50385628 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacaccaca |
50385553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 50394147 - 50393972
Alignment:
| Q |
38 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
137 |
Q |
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| T |
50394147 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50394048 |
T |
|
| Q |
138 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccaca |
213 |
Q |
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| T |
50394047 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacaccaca |
50393972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 38 - 283
Target Start/End: Complemental strand, 50390873 - 50390628
Alignment:
| Q |
38 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
137 |
Q |
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| T |
50390873 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50390774 |
T |
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| Q |
138 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacaccacatgtgccagcaaagaatagcaataa |
237 |
Q |
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| T |
50390773 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaataccacaaatacatgccacaaatagtatcaa |
50390674 |
T |
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| Q |
238 |
catgtctatgctgaaaagggcttgtaatatagtaaaatcttcacct |
283 |
Q |
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| T |
50390673 |
catgtctatgctgaaaagtgcttgaagtatcgtataatcctcacct |
50390628 |
T |
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