View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_low_17 (Length: 450)

Name: NF17861_low_17
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_low_17
NF17861_low_17
[»] chr2 (27 HSPs)
chr2 (44-450)||(10348427-10348841)
chr2 (30-257)||(10372699-10372926)
chr2 (100-382)||(9283349-9283628)
chr2 (100-328)||(10336560-10336782)
chr2 (60-327)||(7114785-7115047)
chr2 (68-257)||(10353962-10354149)
chr2 (145-368)||(9329305-9329528)
chr2 (103-255)||(9316844-9316999)
chr2 (99-255)||(9060269-9060428)
chr2 (139-359)||(12018128-12018345)
chr2 (142-358)||(9275241-9275455)
chr2 (143-317)||(12011811-12011982)
chr2 (143-328)||(12005383-12005565)
chr2 (145-257)||(9321808-9321920)
chr2 (124-255)||(9357935-9358066)
chr2 (143-328)||(11986743-11986925)
chr2 (140-257)||(9292745-9292862)
chr2 (145-257)||(8572722-8572833)
chr2 (145-273)||(7612697-7612825)
chr2 (145-329)||(17565334-17565514)
chr2 (175-224)||(9365445-9365494)
chr2 (178-253)||(14551140-14551215)
chr2 (152-224)||(8578752-8578824)
chr2 (418-450)||(9357825-9357857)
chr2 (419-450)||(8572959-8572990)
chr2 (419-450)||(10353766-10353797)
chr2 (420-450)||(7115107-7115137)
[»] chr4 (3 HSPs)
chr4 (68-257)||(26575696-26575880)
chr4 (178-279)||(561965-562066)
chr4 (419-450)||(26575518-26575549)
[»] scaffold0667 (2 HSPs)
scaffold0667 (100-257)||(5276-5436)
scaffold0667 (419-450)||(5122-5153)
[»] chr3 (3 HSPs)
chr3 (124-255)||(37463341-37463472)
chr3 (143-328)||(39428633-39428809)
chr3 (419-449)||(37463144-37463174)
[»] chr8 (1 HSPs)
chr8 (100-248)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (160-257)||(29452586-29452683)
chr1 (160-248)||(29467060-29467148)
chr1 (124-248)||(29424040-29424164)
chr1 (124-248)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (143-253)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 44 - 450
Target Start/End: Complemental strand, 10348841 - 10348427
Alignment:
Q  44 tgcgaagaaatgaagtaagaaacaaaaaaccctaaac--------cctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggat 135  Q
    ||||||||||||||||||||||| |||||||||||||        ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  10348841 tgcgaagaaatgaagtaagaaacgaaaaaccctaaacggctaaaccctagcagaaccttccttctcattccttggaatggcggctgaacttccgccggat 10348742  T
Q  136 attctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattca 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10348741 attctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattca 10348642  T
Q  236 tcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10348641 tcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccctaacctaaccaaatctat 10348542  T
Q  336 cattccactcaaccatcccttcaccaccaacatcgatccttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgt 435  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348541 cattccactcaactatcccttcactaccaacatcgatccttccacgcggagccccaccgacctcctccgtaacagtaaaatgtctcttatcggttcatgt 10348442  T
Q  436 aacggcctcctcgcc 450  Q
    |||||||||||||||    
T  10348441 aacggcctcctcgcc 10348427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 10372926 - 10372699
Alignment:
Q  30 ttgcatttggtttgtgcgaagaaatgaagtaagaaacaaaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccg 129  Q
    |||||||||||||||   |||||| |||| ||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  10372926 ttgcatttggtttgtagtaagaaaggaaggaagaaatgaaaaaccctaagccctagcagaaccttccttctccttctttgcaatggcggctgaacttccg 10372827  T
Q  130 ccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactca 229  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | ||    
T  10372826 cctgatattctcgccgaagtcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccaca 10372727  T
Q  230 aattcatcaaccttcacctaaaaaattc 257  Q
    |||||||||||||||||||  |||||||    
T  10372726 aattcatcaaccttcacctccaaaattc 10372699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 382
Target Start/End: Original strand, 9283349 - 9283628
Alignment:
Q  100 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 199  Q
    ||||||||| |||||||| | || ||||||||||| || || ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| || |    
T  9283349 tccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttcta 9283448  T
Q  200 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 299  Q
    ||||||||  |||| |||| ||||| | ||||||||||||||||||||| |||| ||| || || ||||| ||||||||||||||||| ||||   || |    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaacttcaaactcatcctccgtcacaagacca---atct 9283545  T
Q  300 ctaccaactccatttcccttacctaaccaaatctatcattccactcaaccatcccttcaccaccaacatcgatccttccacgc 382  Q
    |||||||||| |||||||| ||||||||||||| || || || ||||||||||| |||||||||||||||||||||| |||||    
T  9283546 ctaccaactcgatttccctaacctaaccaaatccataataccgctcaaccatcctttcaccaccaacatcgatcctttcacgc 9283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 10336782 - 10336560
Alignment:
Q  100 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 199  Q
    ||||||||| ||||||||| |   ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10336782 tccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaa 10336686  T
Q  200 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgattt 299  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||  ||||||| || ||||| |||||||||||||||| |||    |||||  |    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaattttaacctcatcctccgtcgcaa---aaccgacct 10336589  T
Q  300 ctaccaactccatttcccttacctaacca 328  Q
    |||||| |||||||||||| |||||||||    
T  10336588 ctaccacctccatttccctaacctaacca 10336560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 327
Target Start/End: Original strand, 7114785 - 7115047
Alignment:
Q  60 aagaaacaaaaaaccctaaaccctagca-gaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccg 158  Q
    |||||||||||||||||||||||||| | ||||||| |  ||||||||    |||||||||||| ||||||||||| || ||  ||||||||||||| ||    
T  7114785 aagaaacaaaaaaccctaaaccctagaacgaaccttgc--ctccttcc----aatggcggctgatcttccgccggaaatactatccgaaatcttctctcg 7114878  T
Q  159 cttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattct 258  Q
    | |||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||     
T  7114879 cctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattcc 7114978  T
Q  259 ctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacc 327  Q
     | ||||||||| |||||||||||||||| | || |||| |||||||||||||||||||| ||||||||    
T  7114979 ttcaatttcaacttcatcctccgtcacaagaacaacgatctctaccaactccatttccctaacctaacc 7115047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 68 - 257
Target Start/End: Complemental strand, 10354149 - 10353962
Alignment:
Q  68 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 167  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||||||||    
T  10354149 aaaaaccctaaaccctagcagaaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcctttcccgcttaccggt 10354052  T
Q  168 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 257  Q
    || |||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||   ||||||||||||||||||||| | ||||||    
T  10354051 aatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattc 10353962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 145 - 368
Target Start/End: Complemental strand, 9329528 - 9329305
Alignment:
Q  145 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 244  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  245 acct---aaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 341  Q
    ||||   ||| ||||| || |||||||||||||||||   |||   ||  |||||| ||||||||||| || | ||| | ||||||||||| || |||||    
T  9329428 acctcaaaaataattccctcaatttcaacctcatcct---tcagctcaataccgatctctaccaactcgatcttcctaatctaaccaaatccatgattcc 9329332  T
Q  342 actcaaccatcccttcaccaccaacat 368  Q
    |||||||||||| |||| |||||||||    
T  9329331 actcaaccatcctttcagcaccaacat 9329305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 103 - 255
Target Start/End: Complemental strand, 9316999 - 9316844
Alignment:
Q  103 ttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 199  Q
    |||||| |||||||||||||    ||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  200 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 255  Q
    ||||||||||||| ||||| ||||| | ||| ||||||||||||||||| ||||||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 9060269 - 9060428
Alignment:
Q  99 ctccttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacc 195  Q
    |||||||||| |||||||||||||    ||||||||||| || || ||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  9060269 ctccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaact 9060368  T
Q  196 tcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 255  Q
    ||||||||||||||||||||||||||||| | ||| ||||  |||||| |||| ||||||    
T  9060369 tcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 139 - 359
Target Start/End: Original strand, 12018128 - 12018345
Alignment:
Q  139 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 238  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||    
T  12018128 ctcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcacca 12018227  T
Q  239 accttcacctaaaaaa---ttctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctat 335  Q
    | ||||| || |||||    || || |||||||||||||||||||||||| |   |||| || ||||||||||||||||||||  ||||||||   |  |    
T  12018228 atcttcaactcaaaaactcatccctcaatttcaacctcatcctccgtcacga---cacccatctctaccaactccatttccctaccctaacca---ccgt 12018321  T
Q  336 cattccactcaaccatcccttcac 359  Q
    ||| |||||||||||||| |||||    
T  12018322 catcccactcaaccatcctttcac 12018345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 142 - 358
Target Start/End: Complemental strand, 9275455 - 9275241
Alignment:
Q  142 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 241  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| | ||| ||||||||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  242 ttcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaaatctatcattcc 341  Q
    |||| || |||||||| || |||||||||||||| || |  ||||||||  || |  ||||| ||||| |||||||| ||||||||||||  || || |     
T  9275355 ttcatctcaaaaattccctcaatttcaacctcattcttcaacacaacac--ccaaactctacgaactcaatttccctaacctaaccaaattcataataca 9275258  T
Q  342 actcaaccatcccttca 358  Q
    |||||||||||| ||||    
T  9275257 actcaaccatcctttca 9275241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 143 - 317
Target Start/End: Original strand, 12011811 - 12011982
Alignment:
Q  143 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 242  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||| ||    
T  12011811 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12011910  T
Q  243 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttccc 317  Q
    |||||| ||||| ||||  || ||||||||||||||||| ||||||||||   || |||| ||||||||||||||    
T  12011911 tcacctcaaaaactctcacaacttcaacctcatcctccgccacaacacca---atctctatcaactccatttccc 12011982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 12005383 - 12005565
Alignment:
Q  143 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 242  Q
    ||||||||||||||||||||||   | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||| | ||| |||| ||||||    
T  12005383 ccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaacct 12005482  T
Q  243 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 328  Q
    ||| |||||||||||||| ||| ||||||| |||||| | ||||| ||||   || ||| ||| |||||||||||| | |||||||    
T  12005483 tcatctaaaaaattctctcaatctcaaccttatcctcggccacaaaacca---atctcttccacctccatttccctaatctaacca 12005565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 9321920 - 9321808
Alignment:
Q  145 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 244  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  245 acctaaaaaattc 257  Q
    | || ||||||||    
T  9321820 atctcaaaaattc 9321808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 9358066 - 9357935
Alignment:
Q  124 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 223  Q
    ||||||||||| || |||||| |||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  9358066 cttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 9357967  T
Q  224 cactcaaattcatcaaccttcacctaaaaaat 255  Q
    | | ||| ||||| ||||||||||| ||||||    
T  9357966 ctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 11986743 - 11986925
Alignment:
Q  143 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 242  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| ||||| | ||| |||| ||| ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  243 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 328  Q
    |||||| | ||| |||   || ||||||||||||||||||||||||||||   || |||| ||||||||||||||| |||||||||    
T  11986843 tcacctcagaaactctgacaacttcaacctcatcctccgtcacaacacca---atctctatcaactccatttccctaacctaacca 11986925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 140 - 257
Target Start/End: Complemental strand, 9292862 - 9292745
Alignment:
Q  140 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaa 239  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  9292862 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 9292763  T
Q  240 ccttcacctaaaaaattc 257  Q
    ||||||||| ||||||||    
T  9292762 ccttcacctcaaaaattc 9292745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 8572722 - 8572833
Alignment:
Q  145 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 244  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||| | ||| |||| ||||||||    
T  8572722 gaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 8572820  T
Q  245 acctaaaaaattc 257  Q
    |||| ||||||||    
T  8572821 acctcaaaaattc 8572833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 145 - 273
Target Start/End: Complemental strand, 7612825 - 7612697
Alignment:
Q  145 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 244  Q
    |||||| |||| |||||||||||| || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| | ||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  245 acctaaaaaattctctaaatttcaacctc 273  Q
    |||| ||||| ||| ||||||||||||||    
T  7612725 acctcaaaaactctttaaatttcaacctc 7612697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 145 - 329
Target Start/End: Original strand, 17565334 - 17565514
Alignment:
Q  145 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 244  Q
    |||||| |||| |||||||| ||| |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| |  || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  245 acctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaaccaa 329  Q
    |||  ||||| ||| |||||||||||||||| ||||| |||||| |||   | ||||||||| |  |||||||| ||||||||||    
T  17565434 acc-caaaaactctttaaatttcaacctcattctccgccacaactcca---aattctaccaagttgatttccctaacctaaccaa 17565514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 9365494 - 9365445
Alignment:
Q  175 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 224  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattc 9365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  178 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 253  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||| |||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 8578752 - 8578824
Alignment:
Q  152 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 224  Q
    ||||||||||||||||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattc 8578824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 9357857 - 9357825
Alignment:
Q  418 tctcttatcggttcatgtaacggcctcctcgcc 450  Q
    |||||||||||||||||||||||||||||||||    
T  9357857 tctcttatcggttcatgtaacggcctcctcgcc 9357825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Original strand, 8572959 - 8572990
Alignment:
Q  419 ctcttatcggttcatgtaacggcctcctcgcc 450  Q
    ||||||||||||||||||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgcc 8572990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Complemental strand, 10353797 - 10353766
Alignment:
Q  419 ctcttatcggttcatgtaacggcctcctcgcc 450  Q
    ||||||||||||||||||||||||||||||||    
T  10353797 ctcttatcggttcatgtaacggcctcctcgcc 10353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 450
Target Start/End: Original strand, 7115107 - 7115137
Alignment:
Q  420 tcttatcggttcatgtaacggcctcctcgcc 450  Q
    |||||||||||||||||||||||||||||||    
T  7115107 tcttatcggttcatgtaacggcctcctcgcc 7115137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 68 - 257
Target Start/End: Complemental strand, 26575880 - 26575696
Alignment:
Q  68 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 167  Q
    ||||||||||||||||||   ||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||    
T  26575880 aaaaaccctaaaccctag---aaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcttctcccgtttaccggt 26575786  T
Q  168 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 257  Q
    || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   ||||||||||||||||||||| | ||||||    
T  26575785 aatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattc 26575696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 279
Target Start/End: Complemental strand, 562066 - 561965
Alignment:
Q  178 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattctctaaatttcaacctcatcc 277  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| | ||| ||||  ||||||||||| ||||| || || ||||| ||||||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaattttaacctcatcc 561967  T
Q  278 tc 279  Q
    ||    
T  561966 tc 561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Complemental strand, 26575549 - 26575518
Alignment:
Q  419 ctcttatcggttcatgtaacggcctcctcgcc 450  Q
    ||||||||||||||||||||||||||||||||    
T  26575549 ctcttatcggttcatgtaacggcctcctcgcc 26575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 100 - 257
Target Start/End: Complemental strand, 5436 - 5276
Alignment:
Q  100 tccttccttgcaatggcggctgagc---ttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacct 196  Q
    ||||||||| |||||||| |||| |   |||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5436 tccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaactt 5337  T
Q  197 caaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 257  Q
    ||||||||||||||||| |||||||||| | ||| ||||||||||||||||  ||||||||    
T  5336 caaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 450
Target Start/End: Complemental strand, 5153 - 5122
Alignment:
Q  419 ctcttatcggttcatgtaacggcctcctcgcc 450  Q
    ||||||||||||||||||||||||||||||||    
T  5153 ctcttatcggttcatgtaacggcctcctcgcc 5122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 124 - 255
Target Start/End: Complemental strand, 37463472 - 37463341
Alignment:
Q  124 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 223  Q
    ||||||||||| || |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37463472 cttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgatt 37463373  T
Q  224 cactcaaattcatcaaccttcacctaaaaaat 255  Q
    | | ||| |||||||||||||| || ||||||    
T  37463372 ctcacaacttcatcaaccttcatctcaaaaat 37463341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 328
Target Start/End: Complemental strand, 39428809 - 39428633
Alignment:
Q  143 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 242  Q
    |||||||| ||||||||||||||||  |||| || |||| |||||||||||| ||||||| | |||||||||||||| |||| | ||| ||||     ||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc-attcccacaacttca-----ct 39428716  T
Q  243 tcacctaaaaaattctctaaatttcaacctcatcctccgtcacaacaccaccgatttctaccaactccatttcccttacctaacca 328  Q
    |||||| ||||| |  || || |||||||||||||| || ||||||  ||   || ||||||||||| |||||||| |||||||||    
T  39428715 tcacctcaaaaactacctcaacttcaacctcatccttcgccacaactgca---atctctaccaactcgatttccctaacctaacca 39428633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 419 - 449
Target Start/End: Complemental strand, 37463174 - 37463144
Alignment:
Q  419 ctcttatcggttcatgtaacggcctcctcgc 449  Q
    |||||||||||||||||||||||||||||||    
T  37463174 ctcttatcggttcatgtaacggcctcctcgc 37463144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 100 - 248
Target Start/End: Original strand, 41965897 - 41966045
Alignment:
Q  100 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 199  Q
    ||||||||  ||||| ||| ||| || ||||| || || ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| |    
T  41965897 tccttcctcacaatgacggttgatctaccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcga 41965996  T
Q  200 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 248  Q
    ||||||||  ||||||||||||||| | ||| |||||||||||||||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacct 41966045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 257
Target Start/End: Original strand, 29452586 - 29452683
Alignment:
Q  160 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaattc 257  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||  |||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattc 29452683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 29467060 - 29467148
Alignment:
Q  160 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 248  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct 29467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 29424164 - 29424040
Alignment:
Q  124 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 223  Q
    ||||||||||| || ||| ||| |||| |||| |  ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||  |||||||||    
T  29424164 cttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgatt 29424065  T
Q  224 cactcaaattcatcaaccttcacct 248  Q
    | | ||  |||||||| ||||||||    
T  29424064 cccacagcttcatcaagcttcacct 29424040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 29442558 - 29442682
Alignment:
Q  124 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 223  Q
    ||||||||||| || ||  ||| |||| |||| |  ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||    
T  29442558 cttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgatt 29442657  T
Q  224 cactcaaattcatcaaccttcacct 248  Q
    | |  || |||||||| ||||||||    
T  29442658 cccataacttcatcaaacttcacct 29442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 143 - 253
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  143 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 242  Q
    |||||||| ||||||||||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  243 tcacctaaaaa 253  Q
    |||||| ||||    
T  36225581 tcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University