View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_18 (Length: 443)
Name: NF17861_low_18
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 8544779 - 8544947
Alignment:
| Q |
257 |
tttcttagctaaattttgaaaacaacaaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
356 |
Q |
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| T |
8544779 |
tttcgtagctaaattttgaaaacaacaaaaggttttctaaaaccaatgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
8544878 |
T |
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| Q |
357 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaa |
425 |
Q |
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| T |
8544879 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaa |
8544947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 257 - 425
Target Start/End: Original strand, 8610018 - 8610186
Alignment:
| Q |
257 |
tttcttagctaaattttgaaaacaacaaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
356 |
Q |
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| T |
8610018 |
tttcgtagctaaattttgaaaacaacaaaaggttttctaaaaccaatgggtccttattatgtctgaaagaactttcatgtttatcgaatttgtgattcaa |
8610117 |
T |
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| Q |
357 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaa |
425 |
Q |
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| T |
8610118 |
tgtgaaaattgctaatcacttggaccaagatgcatgttcttattattattgttattcataggatgggaa |
8610186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 8544681 - 8544780
Alignment:
| Q |
9 |
gaaatgaagatgatagggaagaatgaagttacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
108 |
Q |
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| T |
8544681 |
gaaaagaagatgatagggaagaatgaagtaacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
8544780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 8609920 - 8610019
Alignment:
| Q |
9 |
gaaatgaagatgatagggaagaatgaagttacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
108 |
Q |
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| T |
8609920 |
gaaaagaagatgatagggaagaatgaagtaacctatactgcgcttctccaggtgtgcaatgtgcatattaaaacatatattactctcaacaacacaaatt |
8610019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 333
Target Start/End: Original strand, 25015728 - 25015878
Alignment:
| Q |
183 |
tttccatttcctgttccagttttaatttcaaaagtaccaaaacaatgagaatcataagaagttgtttgcattcttttcttagctaaattttgaaaacaac |
282 |
Q |
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| T |
25015728 |
tttccatttcctgttgcagtaaaaactacaaaaatatcaaaacagtgagaacaataaaaagttgtttgcattgttttctgcgctaaaatttgaaaacagg |
25015827 |
T |
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| Q |
283 |
aaaaggttttctaaaaccaacgggtccttattatgtctgaaagaactttca |
333 |
Q |
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|||| |||||||||||||||| ||| |||| | ||||||||||||||||| |
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| T |
25015828 |
aaaaagttttctaaaaccaacaggttgttatcaagtctgaaagaactttca |
25015878 |
T |
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