View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17861_low_22 (Length: 422)

Name: NF17861_low_22
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17861_low_22
NF17861_low_22
[»] chr7 (9 HSPs)
chr7 (20-404)||(33427285-33427669)
chr7 (275-388)||(37502694-37502811)
chr7 (313-403)||(47814731-47814825)
chr7 (299-404)||(32248241-32248350)
chr7 (8-125)||(33410837-33410956)
chr7 (8-104)||(33424752-33424850)
chr7 (181-257)||(33416867-33416942)
chr7 (343-379)||(8655867-8655903)
chr7 (29-126)||(33416705-33416804)
[»] chr6 (1 HSPs)
chr6 (274-404)||(10461578-10461712)
[»] chr1 (5 HSPs)
chr1 (275-405)||(2170926-2171060)
chr1 (275-404)||(39481993-39482126)
chr1 (294-404)||(28851985-28852099)
chr1 (288-386)||(6843529-6843631)
chr1 (347-404)||(21401582-21401639)
[»] chr2 (2 HSPs)
chr2 (275-388)||(18747772-18747889)
chr2 (345-386)||(4867465-4867506)
[»] chr8 (2 HSPs)
chr8 (266-404)||(34872070-34872212)
chr8 (273-404)||(31371437-31371569)
[»] chr4 (2 HSPs)
chr4 (275-338)||(53239933-53239996)
chr4 (363-404)||(53239886-53239927)


Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 33427669 - 33427285
Alignment:
Q  20 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtgtgaaacatat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  33427669 tcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaagcccatttgatcaaaatttaggtttgaaatatat 33427570  T
Q  120 ttctctcctaagtatggaaattaaatgtaaaatatgtgtccgggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg 219  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33427569 ttctctcctaagtatggaaattaaatgtaaaatatgtgtcggggaaaatgttcctagaatgaatctcaatgaaaagaattgctagctagcaaatgcttcg 33427470  T
Q  220 aaaatgttattgttttgatttgatgaattttgctattcgactagggtatatatatggcaatttttatggtactttaaacaaaattgagtgttttggtact 319  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33427469 aaaatgttattgttttgatttgatgaattttgttattcgactagggtatatatatggcaatttttatggtactttaaacaaaattgagtgttttggtact 33427370  T
Q  320 ctcaaatgtttaaccaataataaccatttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttg 404  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  33427369 ctcaaatatttaaccaataataaccatttcaattaaatgatcaatgccaacattattaaggattgacttgagggaaagagttttg 33427285  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 37502694 - 37502811
Alignment:
Q  275 ggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaata----ataaccatttcaattaaatgatccatgtcaac 370  Q
    |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    |||  ||||||||||||||||||||||||| |    
T  37502694 ggcaatttctatggtactccaaacaaaattgagtgttttggtactctcaaatgtttaaccaatagaaaatagtcatttcaattaaatgatccatgtcagc 37502793  T
Q  371 attattaaagattgactt 388  Q
    ||||||||| ||||||||    
T  37502794 attattaaatattgactt 37502811  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 47814731 - 47814825
Alignment:
Q  313 tggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagtttt 403  Q
    ||||||||||||||||||||||||||  |||    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47814731 tggtactctcaaatgtttaaccaatagaatagtgtcatttcaattaaatgatccatgttaacattattaaagattgacttgagggaaagagtttt 47814825  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 404
Target Start/End: Original strand, 32248241 - 32248350
Alignment:
Q  299 aaaattgagtgttttggtactctcaaatgtttaaccaataataa----ccatttcaattaaatgatccatgtcaacattattaaagattgacttgaggga 394  Q
    ||||||||||||||||||||||||||||||||||||||||  ||      ||||||||| || |||||||||||||||||||||||||||| || | |||    
T  32248241 aaaattgagtgttttggtactctcaaatgtttaaccaatagaaaagtgttatttcaattcaaagatccatgtcaacattattaaagattgatttaaagga 32248340  T
Q  395 aagagttttg 404  Q
    ||||||||||    
T  32248341 aagagttttg 32248350  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 125
Target Start/End: Original strand, 33410837 - 33410956
Alignment:
Q  8 ccaagaatatgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaattta 105  Q
    |||| ||| |||||||| || ||||||||||| |||| ||||||||| |||||||  |||||||| |  ||||||||||   |||||||||||||||||     
T  33410837 ccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatagaaaggatcaaaactacacgagaagaagccatttgatcaaaatttg 33410936  T
Q  106 ggtgtgaaacatatttctct 125  Q
     || || || ||||||||||    
T  33410937 agtttggaaaatatttctct 33410956  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 33424752 - 33424850
Alignment:
Q  8 ccaagaatatgatcagtagccattgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaattt 104  Q
    |||| ||| |||||||| || ||||||||||| |||| ||||||||| ||||| |  |||||||| |  ||||||||||   |||||||||||||||||    
T  33424752 ccaacaatgtgatcagttgcaattgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaattt 33424850  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 33416867 - 33416942
Alignment:
Q  181 aatctcaatgaaaagaattgctagctagcaaatgcttcgaaaatgttattgttttga-tttgatgaattttgctattc 257  Q
    ||||||||| |||||||| ||||||||||||||||| || |||| |  ||||||||| ||||||||||| ||| ||||    
T  33416867 aatctcaatcaaaagaatagctagctagcaaatgctgcgcaaatat--ttgttttgattttgatgaattgtgcaattc 33416942  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Original strand, 8655867 - 8655903
Alignment:
Q  343 ccatttcaattaaatgatccatgtcaacattattaaa 379  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  8655867 ccatttcaattaaatgatctatgtcagcattattaaa 8655903  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 33416705 - 33416804
Alignment:
Q  29 attgcaactgaggaaaataaaaccattgaaatagctaggatcaagaacacacgagaag--cccatttgatcaaaatttaggtgtgaaacatatttctctc 126  Q
    ||||||||||| |||| ||||||||| ||||| |  |||||||| |  ||||||||||   |||||||||||||||||  || || || |||||||||||    
T  33416705 attgcaactgatgaaagtaaaaccatggaaatggaaaggatcaaaactacacgagaagaagccatttgatcaaaatttgagtttggaaaatatttctctc 33416804  T

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Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 274 - 404
Target Start/End: Complemental strand, 10461712 - 10461578
Alignment:
Q  274 tggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaa 369  Q
    |||||||||  ||||||||  |||||||||||||||||||||||||||||||| |||||||||||  ||     ||||||||||||||||||||||||||    
T  10461712 tggcaatttccatggtactccaaacaaaattgagtgttttggtactctcaaatatttaaccaatagaaaagtgtcatttcaattaaatgatccatgtcaa 10461613  T
Q  370 cattattaaagattgacttgagggaaagagttttg 404  Q
    |||||||||||||||| || |||||||||||||||    
T  10461612 cattattaaagattgatttaagggaaagagttttg 10461578  T

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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 275 - 405
Target Start/End: Complemental strand, 2171060 - 2170926
Alignment:
Q  275 ggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaac 370  Q
    |||||||| |||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||  ||||   |||||||||||||||||| ||||||||    
T  2171060 ggcaatttctatgatactccaaataaaattgagtgttttggtactctcaaatgtttaaccaatagaataatgtcatttcaattaaatgatctatgtcaac 2170961  T
Q  371 attattaaagattgacttgagggaaagagttttgt 405  Q
    ||||||||||||| |||| || |||||||||||||    
T  2170960 attattaaagattaacttaagagaaagagttttgt 2170926  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 275 - 404
Target Start/End: Original strand, 39481993 - 39482126
Alignment:
Q  275 ggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaataataac----catttcaattaaatgatccatgtcaac 370  Q
    |||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||| ||||  ||     ||||||||||||||||||| |||||||    
T  39481993 ggcaatttctatggtactctagacaaaattaagtgttttggtactctcaaatgtttaactaatagaaaagtgtcatttcaattaaatgatccttgtcaac 39482092  T
Q  371 attattaaagattgacttgagggaaagagttttg 404  Q
    ||||||||||||||| |  |||||||||||||||    
T  39482093 attattaaagattgattgaagggaaagagttttg 39482126  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 404
Target Start/End: Complemental strand, 28852099 - 28851985
Alignment:
Q  294 taaacaaaattgagtgttttggtactctcaaatgtttaaccaata--ataac--catttcaattaaatgatccatgtcaacattattaaagattgacttg 389  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||  ||||   ||||| |||||||||||||||||||| ||||||||||||||||||     
T  28852099 taaataaaattgagtgttttggtactcttaaatgtttaactaatagaataatgtcattttaattaaatgatccatgtcaatattattaaagattgactta 28852000  T
Q  390 agggaaagagttttg 404  Q
    ||  |||||||||||    
T  28851999 agaaaaagagttttg 28851985  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 288 - 386
Target Start/End: Original strand, 6843529 - 6843631
Alignment:
Q  288 gtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaataata----accatttcaattaaatgatccatgtcaacattattaaagatt 383  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| | |||||| |      ||||||||||||||||||||||||| |||||||| |||||    
T  6843529 gtactctaaacaaaattgagtgtttcggtactctcaaatgtttgatcaataaaagagcgacatttcaattaaatgatccatgtcagcattattagagatt 6843628  T
Q  384 gac 386  Q
    |||    
T  6843629 gac 6843631  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 21401582 - 21401639
Alignment:
Q  347 ttcaattaaatgatccatgtcaacattattaaagattgacttgagggaaagagttttg 404  Q
    ||||||||||||||| ||||||  ||||||||||| | |||| ||| |||||||||||    
T  21401582 ttcaattaaatgatcaatgtcaggattattaaagactaacttaaggaaaagagttttg 21401639  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 18747772 - 18747889
Alignment:
Q  275 ggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaataataa----ccatttcaattaaatgatccatgtcaac 370  Q
    |||||||| ||| |||||  ||||||||| ||||||||||||||||||||||||||||||||||  ||     |||||||||||||| |||||||||| |    
T  18747772 ggcaatttctatagtactccaaacaaaatcgagtgttttggtactctcaaatgtttaaccaatagaaaagtgtcatttcaattaaattatccatgtcagc 18747871  T
Q  371 attattaaagattgactt 388  Q
    ||||||||| ||||||||    
T  18747872 attattaaatattgactt 18747889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 4867465 - 4867506
Alignment:
Q  345 atttcaattaaatgatccatgtcaacattattaaagattgac 386  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  4867465 atttcaattaaatgatccatatcagcattattagagattgac 4867506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 266 - 404
Target Start/End: Original strand, 34872070 - 34872212
Alignment:
Q  266 tatatatatggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaata----ataaccatttcaattaaatgatc 361  Q
    |||||| | ||||||||||||||||||  || ||||||||||||||||| |||||||||||||||||| ||||    |    ||||||||||||| ||||    
T  34872070 tatataaagggcaatttttatggtactccaaccaaaattgagtgttttgttactctcaaatgtttaactaatagaagagtgtcatttcaattaaacgatc 34872169  T
Q  362 catgtcaacattattaaagattgacttgagggaaagagttttg 404  Q
     |||||| |||||||||| |||||||| ||| ||| |||||||    
T  34872170 gatgtcagcattattaaaaattgacttaaggaaaatagttttg 34872212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 273 - 404
Target Start/End: Original strand, 31371437 - 31371569
Alignment:
Q  273 atggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaataataa----ccatttcaattaaatgatccatgtca 368  Q
    |||||||||| |||||||||| ||| |||||||||||||||| ||||||||||| |||||||||||  ||     |||||||||||||| || ||||| |    
T  31371437 atggcaatttctatggtacttcaaataaaattgagtgttttgatactctcaaatatttaaccaatataaaagtgtcatttcaattaaataattcatgtta 31371536  T
Q  369 acattattaaagattgacttgagggaaagagttttg 404  Q
     |||||||||||||||| ||   |||||||||||||    
T  31371537 gcattattaaagattgattt---ggaaagagttttg 31371569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 53239996 - 53239933
Alignment:
Q  275 ggcaatttttatggtactttaaacaaaattgagtgttttggtactctcaaatgtttaaccaata 338  Q
    |||||||| |||| ||||  ||| |||||||||||||||||||||||||||||||||| |||||    
T  53239996 ggcaatttctatgatactccaaataaaattgagtgttttggtactctcaaatgtttaatcaata 53239933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 404
Target Start/End: Complemental strand, 53239927 - 53239886
Alignment:
Q  363 atgtcaacattattaaagattgacttgagggaaagagttttg 404  Q
    |||||||||||||||||||||||||| || ||||||||||||    
T  53239927 atgtcaacattattaaagattgacttaagagaaagagttttg 53239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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