View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17861_low_23 (Length: 416)
Name: NF17861_low_23
Description: NF17861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17861_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 26475780 - 26476133
Alignment:
| Q |
14 |
gaatactaacatacgagatgggaaaaatggggtgttattacgttactacctcccttggcgaagttttgtttgtgaaatttaaagtgcatgtgaataagta |
113 |
Q |
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| T |
26475780 |
gaatactaacatacgagatgggaaaaatggggtgttattacattactacctcccttggcgaagttttgtttgtgaaatttaaagtgcatgtgaataagta |
26475879 |
T |
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| Q |
114 |
cagttagctttgctatacaagatgggaaaaatgagctgtttcattaccaccttccttaaataaatttagtttgtgaaatttaaagtacatgtgaacaagt |
213 |
Q |
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| T |
26475880 |
cagttagctttgctatacaagatgggaaaaatgagctgtttcattaccaccttccttaaataaatttagtttgtgaaatttaaagtacatgtgaacaagt |
26475979 |
T |
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| Q |
214 |
acaattagctttgcttcatttgctcttttgtgcccaagtcgtctctagtagaatcatcaaaatctttatatagtgcttattcnnnnnnnttaaataacaa |
313 |
Q |
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| T |
26475980 |
acaattagctttgcttcatttgctcttttgtgcccaagtcgtctctagtagaatcatcaaaatccttatataatgcttattcaaaaaaattaaataaaaa |
26476079 |
T |
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| Q |
314 |
atcccttctatcaacgataagtcgtaacgcttcatacgctacgttatctcttaatttt |
371 |
Q |
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| T |
26476080 |
atcccttctatcaacgataagtc-taacgct---tacgctacgttatctcttaatttt |
26476133 |
T |
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